2b5eb866f050d964d8964ec5a84f7b63889cc6b1
angie
  Mon Jun 3 14:39:36 2013 -0700
New CGI, hgVai (Variant Annotation Integrator): simple checklist-styleUI by which user can select variants that they have uploaded; gene
predictions to identify which part of a gene, if any, is hit by each
variant; several additional sources of annotations/predictions e.g.
dbNSFP scores and conserved elements/scores; and several filters to
constrain output to the variants most likely to have a functional effect.
Along with the new CGI, there are various lib bugfixes and improvements,
a new hg/lib/tests/ testcase, and some test file changes to accomodate
data updates to both knownGene and the pg* tables in knownGene.
refs #6152

diff --git src/hg/hgVai/makefile src/hg/hgVai/makefile
new file mode 100644
index 0000000..67594de
--- /dev/null
+++ src/hg/hgVai/makefile
@@ -0,0 +1,15 @@
+include ../../inc/common.mk
+
+L += $(MYSQLLIBS) -lm
+MYLIBDIR = ../../lib/${MACHTYPE}
+MYLIBS =  $(MYLIBDIR)/jkhgap.a ${MYLIBDIR}/jkweb.a
+
+A = hgVai
+O = hgVai.o libifyMe.o
+
+include ../../inc/cgi_build_rules.mk
+
+compile:: $O
+	${CC} $O ${MYLIBS} ${L}
+	mv ${AOUT} $A${EXE}
+