2b5eb866f050d964d8964ec5a84f7b63889cc6b1 angie Mon Jun 3 14:39:36 2013 -0700 New CGI, hgVai (Variant Annotation Integrator): simple checklist-styleUI by which user can select variants that they have uploaded; gene predictions to identify which part of a gene, if any, is hit by each variant; several additional sources of annotations/predictions e.g. dbNSFP scores and conserved elements/scores; and several filters to constrain output to the variants most likely to have a functional effect. Along with the new CGI, there are various lib bugfixes and improvements, a new hg/lib/tests/ testcase, and some test file changes to accomodate data updates to both knownGene and the pg* tables in knownGene. refs #6152 diff --git src/hg/inc/annoStreamDb.h src/hg/inc/annoStreamDb.h index cf943e2..63ba7f7 100644 --- src/hg/inc/annoStreamDb.h +++ src/hg/inc/annoStreamDb.h @@ -1,12 +1,12 @@ /* annoStreamDb -- subclass of annoStreamer for database tables */ #ifndef ANNOSTREAMDB_H #define ANNOSTREAMDB_H #include "annoStreamer.h" struct annoStreamer *annoStreamDbNew(char *db, char *table, struct annoAssembly *aa, - struct asObject *asObj); + struct asObject *asObj, int maxOutRows); /* Create an annoStreamer (subclass) object from a database table described by asObj. */ #endif//ndef ANNOSTREAMDB_H