2b5eb866f050d964d8964ec5a84f7b63889cc6b1
angie
  Mon Jun 3 14:39:36 2013 -0700
New CGI, hgVai (Variant Annotation Integrator): simple checklist-styleUI by which user can select variants that they have uploaded; gene
predictions to identify which part of a gene, if any, is hit by each
variant; several additional sources of annotations/predictions e.g.
dbNSFP scores and conserved elements/scores; and several filters to
constrain output to the variants most likely to have a functional effect.
Along with the new CGI, there are various lib bugfixes and improvements,
a new hg/lib/tests/ testcase, and some test file changes to accomodate
data updates to both knownGene and the pg* tables in knownGene.
refs #6152

diff --git src/hg/makefile src/hg/makefile
index 813451f..db4f63a 100644
--- src/hg/makefile
+++ src/hg/makefile
@@ -1,23 +1,23 @@
 # Build all directories in utils
 
 # 	$Id: makefile,v 1.156 2010/03/03 02:53:30 markd Exp $
 
 BROWSER_BINS=cartReset das hgBlat makeDb/hgCgiData hgConvert hgHubConnect \
         hgGateway hgGene hgGenome hgLogin hgPcr hgSession hgSuggest \
         hgTables hgTracks hgTrackUi hgc hgApi cartDump near/hgNear \
-	hgLiftOver visiGene/hgVisiGene \
+	hgLiftOver hgVai visiGene/hgVisiGene \
 	encode/mkEncodeFrameset encode/hgEncodeDataVersions \
 	encode/hgEncodeVocab encode/hgEncodeApi \
 	phyloGif hgCustom hgPal hgFileUi hgFileSearch\
 	makeDb/hgCgiData js htdocs/style
 
 ifdef LOWELAB
     BROWSER_BINS += $(HOME)/lowelab/src/browser/tooltip $(HOME)/lowelab/src/browser/chooseorg
 endif
 
 BROWSER_LOADERS = makeDb/hgLoadBed makeDb/hgLoadWiggle makeDb/hgLoadMaf
 
 ifneq ($(findstring $(shell hostname),hgwdev hgwbeta),)
     ENCODE_FILES =
 endif