080a160c7b9595d516c9c70e83689a09b60839d0
galt
  Mon Jun 3 12:16:53 2013 -0700
fix SQL Injection
diff --git src/hg/inc/affyTranscriptome.h src/hg/inc/affyTranscriptome.h
index 1d1838b..3636ae4 100644
--- src/hg/inc/affyTranscriptome.h
+++ src/hg/inc/affyTranscriptome.h
@@ -1,98 +1,87 @@
 /* affyTranscriptome.h was originally generated by the autoSql program, which also 
  * generated affyTranscriptome.c and affyTranscriptome.sql.  This header links the database and
  * the RAM representation of objects. */
 
 #ifndef AFFYTRANSCRIPTOME_H
 #define AFFYTRANSCRIPTOME_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define AFFYTRANSCRIPTOME_NUM_COLS 9
 
 struct affyTranscriptome
 /* Affymetrix Transcriptome */
     {
     struct affyTranscriptome *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome */
     unsigned chromStart;	/* Start in Chromosome */
     unsigned chromEnd;	/* End in Chromosome */
     char *name;	/* Name */
     unsigned score;	/* Score */
     char strand[2];	/* Strand */
     unsigned sampleCount;	/* Number of points in this record */
     char *samplePosition;	/* Posititions of the oligos */
     char *sampleHeight;	/* Intentisy of hybridization */
     };
 
 void affyTranscriptomeStaticLoad(char **row, struct affyTranscriptome *ret);
 /* Load a row from affyTranscriptome table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct affyTranscriptome *affyTranscriptomeLoad(char **row);
 /* Load a affyTranscriptome from row fetched with select * from affyTranscriptome
  * from database.  Dispose of this with affyTranscriptomeFree(). */
 
 struct affyTranscriptome *affyTranscriptomeLoadAll(char *fileName);
 /* Load all affyTranscriptome from whitespace-separated file.
  * Dispose of this with affyTranscriptomeFreeList(). */
 
 struct affyTranscriptome *affyTranscriptomeLoadAllByChar(char *fileName, char chopper);
 /* Load all affyTranscriptome from chopper separated file.
  * Dispose of this with affyTranscriptomeFreeList(). */
 
 #define affyTranscriptomeLoadAllByTab(a) affyTranscriptomeLoadAllByChar(a, '\t');
 /* Load all affyTranscriptome from tab separated file.
  * Dispose of this with affyTranscriptomeFreeList(). */
 
 struct affyTranscriptome *affyTranscriptomeLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all affyTranscriptome from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with affyTranscriptomeFreeList(). */
 
 void affyTranscriptomeSaveToDb(struct sqlConnection *conn, struct affyTranscriptome *el, char *tableName, int updateSize);
 /* Save affyTranscriptome as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. Note that strings must be escaped to allow insertion into the database.
- * For example "autosql's features include" --> "autosql\'s features include" 
- * If worried about this use affyTranscriptomeSaveToDbEscaped() */
-
-void affyTranscriptomeSaveToDbEscaped(struct sqlConnection *conn, struct affyTranscriptome *el, char *tableName, int updateSize);
-/* Save affyTranscriptome as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size.
- * of a string that would contain the entire query. Automatically 
- * escapes all simple strings (not arrays of string) but may be slower than affyTranscriptomeSaveToDb().
- * For example automatically copies and converts: 
- * "autosql's features include" --> "autosql\'s features include" 
- * before inserting into database. */ 
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct affyTranscriptome *affyTranscriptomeCommaIn(char **pS, struct affyTranscriptome *ret);
 /* Create a affyTranscriptome out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new affyTranscriptome */
 
 void affyTranscriptomeFree(struct affyTranscriptome **pEl);
 /* Free a single dynamically allocated affyTranscriptome such as created
  * with affyTranscriptomeLoad(). */
 
 void affyTranscriptomeFreeList(struct affyTranscriptome **pList);
 /* Free a list of dynamically allocated affyTranscriptome's */
 
 void affyTranscriptomeOutput(struct affyTranscriptome *el, FILE *f, char sep, char lastSep);
 /* Print out affyTranscriptome.  Separate fields with sep. Follow last field with lastSep. */
 
 #define affyTranscriptomeTabOut(el,f) affyTranscriptomeOutput(el,f,'\t','\n');
 /* Print out affyTranscriptome as a line in a tab-separated file. */
 
 #define affyTranscriptomeCommaOut(el,f) affyTranscriptomeOutput(el,f,',',',');
 /* Print out affyTranscriptome as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* AFFYTRANSCRIPTOME_H */