080a160c7b9595d516c9c70e83689a09b60839d0
galt
  Mon Jun 3 12:16:53 2013 -0700
fix SQL Injection
diff --git src/hg/inc/bed12wSeq.h src/hg/inc/bed12wSeq.h
index 210e983..92cc19d 100644
--- src/hg/inc/bed12wSeq.h
+++ src/hg/inc/bed12wSeq.h
@@ -1,96 +1,85 @@
 /* bed12wSeq.h was originally generated by the autoSql program, which also 
  * generated bed12wSeq.c and bed12wSeq.sql.  This header links the database and
  * the RAM representation of objects. */
 
 #ifndef BED12WSEQ_H
 #define BED12WSEQ_H
 
 #include "jksql.h"
 #define BED12WSEQ_NUM_COLS 14
 
 struct bed12wSeq
 /* Browser extensible data (12 fields) plus two sequences */
     {
     struct bed12wSeq *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome (or contig, scaffold, etc.) */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Name of item */
     unsigned score;	/* Score from 0-1000 */
     char strand[2];	/* + or - */
     unsigned thickStart;	/* Start of where display should be thick (start codon) */
     unsigned thickEnd;	/* End of where display should be thick (stop codon) */
     unsigned reserved;	/* Used as itemRgb as of 2004-11-22 */
     int blockCount;	/* Number of blocks */
     int *blockSizes;	/* Comma separated list of block sizes */
     int *chromStarts;	/* Start positions relative to chromStart */
     char *seq1;	/* sequence 1, normally left paired end */
     char *seq2;	/* sequence 2, normally right paired end */
     };
 
 struct bed12wSeq *bed12wSeqLoad(char **row);
 /* Load a bed12wSeq from row fetched with select * from bed12wSeq
  * from database.  Dispose of this with bed12wSeqFree(). */
 
 struct bed12wSeq *bed12wSeqLoadAll(char *fileName);
 /* Load all bed12wSeq from whitespace-separated file.
  * Dispose of this with bed12wSeqFreeList(). */
 
 struct bed12wSeq *bed12wSeqLoadAllByChar(char *fileName, char chopper);
 /* Load all bed12wSeq from chopper separated file.
  * Dispose of this with bed12wSeqFreeList(). */
 
 #define bed12wSeqLoadAllByTab(a) bed12wSeqLoadAllByChar(a, '\t');
 /* Load all bed12wSeq from tab separated file.
  * Dispose of this with bed12wSeqFreeList(). */
 
 struct bed12wSeq *bed12wSeqLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all bed12wSeq from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with bed12wSeqFreeList(). */
 
 void bed12wSeqSaveToDb(struct sqlConnection *conn, struct bed12wSeq *el, char *tableName, int updateSize);
 /* Save bed12wSeq as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. Note that strings must be escaped to allow insertion into the database.
- * For example "autosql's features include" --> "autosql\'s features include" 
- * If worried about this use bed12wSeqSaveToDbEscaped() */
-
-void bed12wSeqSaveToDbEscaped(struct sqlConnection *conn, struct bed12wSeq *el, char *tableName, int updateSize);
-/* Save bed12wSeq as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size.
- * of a string that would contain the entire query. Automatically 
- * escapes all simple strings (not arrays of string) but may be slower than bed12wSeqSaveToDb().
- * For example automatically copies and converts: 
- * "autosql's features include" --> "autosql\'s features include" 
- * before inserting into database. */ 
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct bed12wSeq *bed12wSeqCommaIn(char **pS, struct bed12wSeq *ret);
 /* Create a bed12wSeq out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new bed12wSeq */
 
 void bed12wSeqFree(struct bed12wSeq **pEl);
 /* Free a single dynamically allocated bed12wSeq such as created
  * with bed12wSeqLoad(). */
 
 void bed12wSeqFreeList(struct bed12wSeq **pList);
 /* Free a list of dynamically allocated bed12wSeq's */
 
 void bed12wSeqOutput(struct bed12wSeq *el, FILE *f, char sep, char lastSep);
 /* Print out bed12wSeq.  Separate fields with sep. Follow last field with lastSep. */
 
 #define bed12wSeqTabOut(el,f) bed12wSeqOutput(el,f,'\t','\n');
 /* Print out bed12wSeq as a line in a tab-separated file. */
 
 #define bed12wSeqCommaOut(el,f) bed12wSeqOutput(el,f,',',',');
 /* Print out bed12wSeq as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* BED12WSEQ_H */