File Changes for tdreszer

v284_base to v285_preview (2013-05-27 to 2013-06-04) v285

• src/hg/htdocs/goldenPath/help/trackDb/makefile
  • lines changed 27, context: html, text, full: html, text
    Adding a makefile for trackDbDoc.html, though it does not need it. This directories contents is already copied from the htdocs dir make.
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 20, context: html, text, full: html, text
    Minor changes to the detailed explanation of how things work. Also, mentioned the new make file.
• src/hg/js/alleles.js
  • lines changed 3, context: html, text, full: html, text
    Accidentally lost persistence of variant site highlighting by sort
• src/hg/lib/haplotypes.c
  • lines changed 3, context: html, text, full: html, text
    Minor wording changes only seen when the geneAlleles command-line tool is used.
  • lines changed 13, context: html, text, full: html, text
    Link on variant to 1000 genomes hgc page will now target a named page/tab. This is the solution that Brooke agreed to for the 'back-button not playing with ajax' problem listed in ref #10653.
• src/hg/lib/mdb.c
  • lines changed 115, context: html, text, full: html, text
    Three changes to attempt to recover from mysql performace degradation (ref #10910). 1. Added index to val. 2. Replaced subqueries with joins. 3. Replaced ORDER BY query with in code sort.
• src/hg/lib/metaDb.as
  • lines changed 2, context: html, text, full: html, text
    Three changes to attempt to recover from mysql performace degradation (ref #10910). 1. Added index to val. 2. Replaced subqueries with joins. 3. Replaced ORDER BY query with in code sort.
• src/hg/lib/metaDb.sql
  • lines changed 8, context: html, text, full: html, text
    Three changes to attempt to recover from mysql performace degradation (ref #10910). 1. Added index to val. 2. Replaced subqueries with joins. 3. Replaced ORDER BY query with in code sort.