File Changes for braney

v285_preview to v285_preview2 (2013-06-04 to 2013-06-11) v285

• src/hg/hgGene/hgGeneData/links.ra
  • lines changed 1, context: html, text, full: html, text
    change TreeFam link out URL refs #10874
• src/hg/hgGenome/hgGenome.c
  • lines changed 3, context: html, text, full: html, text
    notify folks that genome graphs doesn't work with assembly hubs
• src/hg/hgc/hgc.c
  • lines changed 1, context: html, text, full: html, text
    increase the size of buffer that was being exceeded on SOD1
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
  • lines changed 90, context: html, text, full: html, text
    first pass at documentation for assembly hubs and track item search refs #8072
  • lines changed 1, context: html, text, full: html, text
    clean up twoBit and trix pages a bit. Still need a lot of work
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.html
  • lines changed 6, context: html, text, full: html, text
    first pass at documentation for assembly hubs and track item search refs #8072
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 22, context: html, text, full: html, text
    first pass at documentation for assembly hubs and track item search refs #8072
  • lines changed 1, context: html, text, full: html, text
    add new html files for trix and twoBit.
• src/hg/htdocs/goldenPath/help/trix.html
  • lines changed 45, context: html, text, full: html, text
    add new html files for trix and twoBit.
  • lines changed 13, context: html, text, full: html, text
    clean up twoBit and trix pages a bit. Still need a lot of work
• src/hg/htdocs/goldenPath/help/twoBit.html
  • lines changed 58, context: html, text, full: html, text
    add new html files for trix and twoBit.
  • lines changed 26, context: html, text, full: html, text
    clean up twoBit and trix pages a bit. Still need a lot of work
• src/hg/lib/gwasCatalog.sql
  • lines changed 1, context: html, text, full: html, text
    make title field 1024 instead of 255 because it was getting truncated.
• src/hg/lib/trackHub.c
  • lines changed 1, context: html, text, full: html, text
    fill in browserName for hgPos records so hgFind will highlight the element refs #10426
• src/hg/makeDb/doc/proteins/121210.txt
  • lines changed 9, context: html, text, full: html, text
    add most current reactome tables to proteome database
• src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes14.csh
  • lines changed 146, context: html, text, full: html, text
    ongoing work on UCSC genes for hg19
  • lines changed 23, context: html, text, full: html, text
    clean up some TODO's in UCSC genes, add some notes for next time, fix txCdsToGene to continue after a warning.
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    add kg6ToKg7 for UCSC genes
• src/hg/txCds/txCdsToGene/txCdsToGene.c
  • lines changed 3, context: html, text, full: html, text
    clean up some TODO's in UCSC genes, add some notes for next time, fix txCdsToGene to continue after a warning.