3ccf49931df17a0763b6ffea00823eb60d15cf95
hiram
  Fri Jun 7 09:29:16 2013 -0700
indicate an alternative to using git refs #9149
diff --git src/userApps/Makefile src/userApps/Makefile
index ac500f3..d59ac17 100644
--- src/userApps/Makefile
+++ src/userApps/Makefile
@@ -10,46 +10,45 @@
 export CGI_BIN = ${DESTDIR}/cgi-bin
 export DOCUMENTROOT = ${DESTDIR}/htdocs
 export SCRIPTS = ${DESTDIR}/scripts
 export SAMTABIXDIR = ${DESTDIR}/samtabix
 export USE_SAMTABIX = 1
 export USE_SSL = 1
 export NOSQLTEST = 1
 
 all:  utils
 
 utils: libs
 	cd kent/src && ${MAKE} userApps
 	cd kent/src/parasol && ${MAKE}
 	./kent/src/utils/userApps/mkREADME.sh ${DESTDIR}/${BINDIR} ${CURDIR}/kentUtils.Documentation.txt
 
-libs:
+libs: installEnvironment
 	cd samtabix && ${MAKE}
 	cd kent/src && ${MAKE} libs
 
 clean:
 	cd kent/src && ${MAKE} -i -k clean
 	rm -f part1Src.zip part2Src.zip part3Src.zip part4Src.zip part5Src.zip
 	rm -f userApps.zip
 
 fetchSource:
 	./fetchKentSource.sh
 	@echo -n "size of fetched kent source tree: "
 	@du -hs kent
 	@echo -n "number of files in kent source tree: "
 	@find ./kent -type f | wc -l
-	@${MAKE} installEnvironment
 
 # this installEnvironment will add all the shell environment variables
 # to the kent/src/inc/localEnvironment.mk file which is included
 # from the kent/src/inc/userApps.mk to allow any 'make' to function
 # properly when inside this extracted source tree.  The 'sed' operation
 # removes the '-e' from the echo for systems where the echo command doesn't
 # recognize the '-e' argument
 
 installEnvironment:
 	@echo -e "export DESTDIR = ${DESTDIR}\n\
 export BINDIR = ${BINDIR}\n\
 export MACHTYPE = ${MACHTYPE}\n\
 export CGI_BIN = ${CGI_BIN}\n\
 export DOCUMENTROOT = ${DOCUMENTROOT}\n\
 export SCRIPTS = ${SCRIPTS}\n\