Commits for hiram
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v286_preview2 to v286_base (2013-07-02 to 2013-07-09) v286
- was missing the Ensembl blue bar nav help for all assemblies with ucscToEnsembl table refs #11114
- add note about pre-compiled binaries refs #9149
- in the pushQ 007055 refs #8750
- src/hg/makeDb/doc/allMis1.txt - lines changed 7, context: html, text, full: html, text
- adding eriEur2 refs #9149
- src/hg/makeDb/schema/all.joiner - lines changed 16, context: html, text, full: html, text
- update ficAlb1 to ficAlb2 refs #10272
- src/hg/utils/phyloTrees/108way.nh - lines changed 1, context: html, text, full: html, text
- src/hg/utils/phyloTrees/commonNames.sh - lines changed 1, context: html, text, full: html, text
- src/hg/utils/phyloTrees/scientificNames.sh - lines changed 1, context: html, text, full: html, text
- finish up lastz swaps to tarSyr1 papHam1 otoGar3 refs #10272
- src/hg/makeDb/doc/hg19.txt - lines changed 21, context: html, text, full: html, text
- running lastz swaps to pteVam1 choHof1 proCap1 dipOrd1 refs #10272
- src/hg/makeDb/doc/hg19.txt - lines changed 74, context: html, text, full: html, text
- finish off lastz swaps to pteVam1 proCap1 starting lastz runs to tupChi1 and octDeg1 refs #10272
- src/hg/makeDb/doc/hg19.txt - lines changed 137, context: html, text, full: html, text
- finishing off tupChi1 lastz run on chaining chr19 on octDeg1 lastz refs #10272
- src/hg/makeDb/doc/hg19.txt - lines changed 15, context: html, text, full: html, text
- starting lastz runs on oryAfe1 chrAsi1 eleEdw1 dasNov3 refs #10272
- src/hg/makeDb/doc/hg19.txt - lines changed 241, context: html, text, full: html, text
- clean up the liftOverChain to allow choices for toDb where it is actually in dbDb refs #10272
- src/hg/hgConvert/hgConvert.c - lines changed 33, context: html, text, full: html, text
- moving to beta branch for version 286 build refs #9149
- src/userApps/fetchKentSource.sh - lines changed 4, context: html, text, full: html, text
- ready to do the hg19 chain net then into the pushQ refs #9419
- src/hg/makeDb/doc/eriEur2.txt - lines changed 70, context: html, text, full: html, text
- starting lastz on eriEur2 refs #9419
- src/hg/makeDb/doc/hg19.txt - lines changed 57, context: html, text, full: html, text
- working up new scheme to order all the new assemblies in between the existing ones refs #10272
- src/hg/utils/phyloTrees/108way.dissect.txt - lines changed 1505, context: html, text, full: html, text
- src/hg/utils/phyloTrees/108wayChainNet.pl - lines changed 212, context: html, text, full: html, text
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