Commits for hiram
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v285_base to v286_preview (2013-06-18 to 2013-06-24) v286
- adding eriEur2 hedgehog refs #9419
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 17, context: html, text, full: html, text
- running lastz runs for ochPri3 oviAri3 sorAra2 taeGut2 vicPac2 refs #9347 #9409 #9348 #10190 #10833
- src/hg/makeDb/doc/hg19.txt - lines changed 342, context: html, text, full: html, text
- lastz to echTel2 and sorAra2 refs #9348 #9693
- src/hg/makeDb/doc/echTel2.txt - lines changed 82, context: html, text, full: html, text
- src/hg/makeDb/doc/mm10.txt - lines changed 130, context: html, text, full: html, text
- src/hg/makeDb/doc/sorAra2.txt - lines changed 73, context: html, text, full: html, text
- initial pika files ochPri3 from makeGenomeDb.pl refs #9347
- src/hg/makeDb/trackDb/pika/ochPri3/description.html - lines changed 63, context: html, text, full: html, text
- src/hg/makeDb/trackDb/pika/ochPri3/gap.html - lines changed 30, context: html, text, full: html, text
- src/hg/makeDb/trackDb/pika/ochPri3/gold.html - lines changed 34, context: html, text, full: html, text
- src/hg/makeDb/trackDb/pika/ochPri3/trackDb.ra - lines changed 8, context: html, text, full: html, text
- adding pika/ochPri3 to the build refs #9347
- src/hg/makeDb/trackDb/makefile - lines changed 2, context: html, text, full: html, text
- running masking refs #9347
- src/hg/makeDb/doc/ochPri3.txt - lines changed 2074, context: html, text, full: html, text
- Added vicPac2 to daily hgwdev build refs #10833
- src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
- adding vicPac2 rules refs #10833
- src/hg/makeDb/schema/all.joiner - lines changed 17, context: html, text, full: html, text
- prompted NCBI to fix the rn5 cytoband file, load up cytoBand and Ideo refs #8529
- src/hg/makeDb/doc/rn5.txt - lines changed 43, context: html, text, full: html, text
- Added oviAri3. refs #9409
- src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
- Added allMis1 refs #8750
- src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
- adding allMis1 rules refs #8750
- src/hg/makeDb/schema/all.joiner - lines changed 11, context: html, text, full: html, text
- adding ensGene v72 definitions, suspiciously identical to v71, refs #11114
- src/hg/utils/automation/EnsGeneAutomate.pm - lines changed 197, context: html, text, full: html, text
- masking done starting genscan cpgIslands and ready for genbank refs #9347
- src/hg/makeDb/doc/ochPri3.txt - lines changed 48, context: html, text, full: html, text
- add localEnvironment.mk include so local makes can work here for userApps refs #9149
- add new rules for finding mysql as found by compiling on beer30 refs #9149
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/melGal1.txt - lines changed 21, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/danRer7.txt - lines changed 28, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/myoLuc2.txt - lines changed 21, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/equCab2.txt - lines changed 21, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/oryCun2.txt - lines changed 21, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/calJac3.txt - lines changed 21, context: html, text, full: html, text
- running lastz runs for ochPri3 oviAri3 sorAra2 taeGut2 vicPac2 refs #9347 #9409 #9348 #10190 #10833
- src/hg/makeDb/doc/hg19.txt - lines changed 42, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/loxAfr3.txt - lines changed 21, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/ponAbe2.txt - lines changed 21, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/ailMel1.txt - lines changed 21, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/gorGor3.txt - lines changed 19, context: html, text, full: html, text
- construct liftOvers to loxAfr3 refs #11064
- src/hg/makeDb/doc/loxAfr1.txt - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/doc/loxAfr2.txt - lines changed 21, context: html, text, full: html, text
- catching up windowMasker on all 100+ assemblies refs #10272
- src/hg/makeDb/doc/ornAna1.txt - lines changed 20, context: html, text, full: html, text
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