Commits for braney

v286_preview to v286_preview2 (2013-06-24 to 2013-07-02) v286

• some more changes to the doc for assembly hubs and track item search
  • src/hg/htdocs/goldenPath/help/bigBed.html - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trix.html - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/twoBit.html - lines changed 13, context: html, text, full: html, text
• make sqli play nice
  • src/hg/makeDb/genbank/src/lib/sqlUpdater.c - lines changed 1, context: html, text, full: html, text
• fix bug caused by my freeing memory that I was using as a cache. D'oh! refs #11165
  • src/hg/lib/hubConnect.c - lines changed 3, context: html, text, full: html, text
• fix the name similarity sort for rn4. refs #7129
  • src/hg/near/hgNear/hgNearData/Rat/rn4/orderDb.ra - lines changed 1, context: html, text, full: html, text
• take out superflous printf on Hiram's request
  • src/hg/makeDb/genbank/src/dbload/gbLoadRna.c - lines changed 1, context: html, text, full: html, text
• build a couple more tables in the proteins database
  • src/hg/makeDb/doc/proteins/121210.txt - lines changed 3, context: html, text, full: html, text
• rebuild after realizing I used rn4 instead of rheMac2 for zdb. D'oh!
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes14.csh - lines changed 109, context: html, text, full: html, text
• generate new ucscGenePfam table
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes14.csh - lines changed 9, context: html, text, full: html, text