5e8542e0abcfa034c17d61ba5f9833b718ac1aa0 luvina Fri Jun 28 10:42:28 2013 -0700 added news announcement for hg19 ucsc genes diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index ab319da..a6c42d0 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -13,31 +13,63 @@ SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> + <p> + <font face="courier" size="3"><b>28 June 2013 + - New UCSC Genes Track Released for GRCh37/hg19</b></font> + </p> + <p> + We're happy to announce the release of an updated UCSC Genes + track for the GRCh37/hg19 human Genome Browser. + The new release has 82,960 total transcripts, compared with + 80,922 in the previous version. The total number of canonical + genes has increased from 31,227 to 31,848. Comparing the new + gene set with the previous version: + <ul> + <li>74,657 transcripts did not change between versions. + <li>88 transcripts were not carried forward to the new version. + <li>5,556 transcripts are "compatible" with those in the previous set, + meaning that the two transcripts show consistent splicing. + In most cases, the old and new transcripts differ in the + lengths of their UTRs. + <li>621 transcripts overlap with those in the previous set but + do not show consistent splicing, i.e., they contain overlapping + introns with differing splice sites. + </ul> + </p> + <p> + More details about the new UCSC Genes track can be found on + the <a href="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=knownGene" + >UCSC Genes track description page</a>. + </p> + <p> + Many thanks to Brian Raney, Jim Kent, and Luvina Guruvadoo + for their work on this track! + </p> <p> <font face="courier" size="3"><b>27 June 2013 - New Official European Mirror Released</b></font> </p> <p> The UCSC Genome Browser is pleased to announce the introduction of a new mirror site to serve our users in Europe. Genome-euro is an official European mirror site of the UCSC Genome Browser, at <A HREF = "http://genome-euro.ucsc.edu" TARGET = _BLANK> http://genome-euro.ucsc.edu</A>. The server is physically located at the Universität Bielefeld Center for Biotechnology in Bielefeld, Germany, and is administered