5e8542e0abcfa034c17d61ba5f9833b718ac1aa0 luvina Fri Jun 28 10:42:28 2013 -0700 added news announcement for hg19 ucsc genes diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index ab319da..a6c42d0 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,136 +1,168 @@ <!--News Section-----------------------------------------------> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> + <p> + <font face="courier" size="3"><b>28 June 2013 + - New UCSC Genes Track Released for GRCh37/hg19</b></font> + </p> + <p> + We're happy to announce the release of an updated UCSC Genes + track for the GRCh37/hg19 human Genome Browser. + The new release has 82,960 total transcripts, compared with + 80,922 in the previous version. The total number of canonical + genes has increased from 31,227 to 31,848. Comparing the new + gene set with the previous version: + <ul> + <li>74,657 transcripts did not change between versions. + <li>88 transcripts were not carried forward to the new version. + <li>5,556 transcripts are "compatible" with those in the previous set, + meaning that the two transcripts show consistent splicing. + In most cases, the old and new transcripts differ in the + lengths of their UTRs. + <li>621 transcripts overlap with those in the previous set but + do not show consistent splicing, i.e., they contain overlapping + introns with differing splice sites. + </ul> + </p> + <p> + More details about the new UCSC Genes track can be found on + the <a href="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=knownGene" + >UCSC Genes track description page</a>. + </p> + <p> + Many thanks to Brian Raney, Jim Kent, and Luvina Guruvadoo + for their work on this track! + </p> <p> <font face="courier" size="3"><b>27 June 2013 - New Official European Mirror Released</b></font> </p> <p> The UCSC Genome Browser is pleased to announce the introduction of a new mirror site to serve our users in Europe. Genome-euro is an official European mirror site of the UCSC Genome Browser, at <A HREF = "http://genome-euro.ucsc.edu" TARGET = _BLANK> http://genome-euro.ucsc.edu</A>. The server is physically located at the Universität Bielefeld Center for Biotechnology in Bielefeld, Germany, and is administered by UCSC. Genome-euro is meant to be an alternate, faster access point for those Browser users who are geographically closer to central Europe than to the western United States. </p> <p> All functionality will be the same as on the US server, although Custom Tracks will not be transfered. Saved Sessions containing Custom Tracks will require some manual <A HREF = "http://genome.ucsc.edu/goldenPath/help/genomeEuro.html#sessions" TARGET = _BLANK>intervention</A>. </p> <p> When European users navigate to the US server home page and click the "Genomes" menu item, they will receive a notification that they have been redirected to the more geographically-appropriate server. They will have the option to remain on the US server, as described in our <A HREF = "http://genome.ucsc.edu/goldenPath/help/genomeEuro.html" TARGET = _BLANK>documentation</A>. </p> <p> The backup mirror in <A HREF = "http://genome-mirror.moma.ki.au.dk/" TARGET = _BLANK>Aarhus, Denmark</A> will continue to serve as an emergency site in the event of the official sites in California and Germany malfunctioning. </p> <p> We wish to express our special thanks to our colleagues at the Universität Bielefeld Bioinformatics, especially Jens Stoye, for making this possible. </p> <p> <font face="courier" size="3"><b>26 June 2013 - Suggestion Box Released</b></font </p> <p> Due to popular demand, we have created a suggestion box for track, assembly, tool, and other requests. All suggestions will be assigned a reference number so that you may follow up on their progress with our staff. Please limit the use of this form to requests for new features; questions and reports of problems about existing features and data should continue to be directed to our mailing lists. You may reach the suggestion box from the <a href="contacts.html">Contact Us</a> page or by <a href="cgi-bin/hgUserSuggestion">clicking here</a>. </p> <p> <!-- start archives --> <hr> <!-- staged for archive use <p> <font face="courier" size="3"><b>27 June 2013 - New Official European Mirror Released</b></font> Announcing an official mirror for European users, with automatic redirection. <a href="goldenPath/newsarch.html#062713">Read more</a>.</p> </p> <p> <font face="courier" size="3"><b>26 June 2013 - Suggestion Box Released:</b></font> Due to popular demand, we have created a suggestion box for track, assembly, tool, and other feature requests. <a href="goldenPath/newsarch.html#062613">Read more</a>.</p> --> <p> <font face="courier" size="3"><b>12 June 2013 - Ferret Genome Browser Released:</b></font> A Genome Browser is now available for the Ferret (<em>Mustela putorius furo</em>) assembly released by the Ferret Genome Sequencing Consortium April 2011 (version MusPutFur1.0, UCSC version musFur1). <a href="goldenPath/newsarch.html#061213">Read more</a>.</p> <p> <font face="courier" size="3"><b>22 May 2013 - Gibbon Genome Browser Released:</b></font> A Genome Browser is now available for the Gibbon (<em>Nomascus leucogenys</em>) assembly released by the Gibbon Genome Sequencing Consortium October 2012 (version Nleu_3.0, UCSC version nomLeu3). <a href="goldenPath/newsarch.html#052213">Read more</a>.</p> ==> <a href="goldenPath/newsarch.html">News Archives</a> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>