File Changes for kent

v287_preview2 to v287_base (2013-07-23 to 2013-07-30) v287

• src/hg/encode3/encodeDataWarehouse/edwAddQaContamTarget/edwAddQaContamTarget.c
  • lines changed 52, context: html, text, full: html, text
    Seems to work.
• src/hg/encode3/encodeDataWarehouse/edwAddQaContamTarget/makefile
  • lines changed 4, context: html, text, full: html, text
    Seems to work.
• src/hg/encode3/encodeDataWarehouse/edwAddQaContamTarget/makk
  • lines changed 3, context: html, text, full: html, text
    Seems to work.
• src/hg/encode3/encodeDataWarehouse/edwAddQaEnrichTarget/edwAddQaEnrichTarget.c
  • lines changed 1, context: html, text, full: html, text
    Changing connect to use librrary routine.
• src/hg/encode3/encodeDataWarehouse/edwChangeFormat/edwChangeFormat.c
  • lines changed 47, context: html, text, full: html, text
    Making new edwCorrectFileTags utility to correct file tags after upload. Moving stuff from edwChangeFormat to library to reuse in this context.
• src/hg/encode3/encodeDataWarehouse/edwCorrectFileTags/edwCorrectFileTags.c
  • lines changed 104, context: html, text, full: html, text
    Making new edwCorrectFileTags utility to correct file tags after upload. Moving stuff from edwChangeFormat to library to reuse in this context.
• src/hg/encode3/encodeDataWarehouse/edwCorrectFileTags/makefile
  • lines changed 4, context: html, text, full: html, text
    Making new edwCorrectFileTags utility to correct file tags after upload. Moving stuff from edwChangeFormat to library to reuse in this context.
• src/hg/encode3/encodeDataWarehouse/edwCorrectFileTags/makk
  • lines changed 3, context: html, text, full: html, text
    Making new edwCorrectFileTags utility to correct file tags after upload. Moving stuff from edwChangeFormat to library to reuse in this context.
• src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c
  • lines changed 133, context: html, text, full: html, text
    Moving several routines to library. Supporting fasta files.
• src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c
  • lines changed 112, context: html, text, full: html, text
    Adding support for replacement operations.
  • lines changed 1, context: html, text, full: html, text
    Adding fasta files.
• src/hg/encode3/encodeDataWarehouse/edwWebDeprecate/edwWebDeprecate.c
  • lines changed 163, context: html, text, full: html, text
    First cut seems to work.
  • lines changed 3, context: html, text, full: html, text
    Improving memory management.
• src/hg/encode3/encodeDataWarehouse/edwWebDeprecate/makefile
  • lines changed 16, context: html, text, full: html, text
    First cut seems to work.
• src/hg/encode3/encodeDataWarehouse/edwWebDeprecate/makk
  • lines changed 3, context: html, text, full: html, text
    Adding little script to send it to San Diego.
• src/hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c
  • lines changed 1, context: html, text, full: html, text
    Improving comment.
• src/hg/encode3/encodeDataWarehouse/inc/edwLib.h
  • lines changed 4, context: html, text, full: html, text
    Making new edwCorrectFileTags utility to correct file tags after upload. Moving stuff from edwChangeFormat to library to reuse in this context.
  • lines changed 5, context: html, text, full: html, text
    Moving edwAlignFastqMakeBed from edwMakeValid file to library so it can be shared.
• src/hg/encode3/encodeDataWarehouse/inc/encodeDataWarehouse.h
  • lines changed 152, context: html, text, full: html, text
    Defining tables for contamination screening.
• src/hg/encode3/encodeDataWarehouse/lib/edwLib.c
  • lines changed 31, context: html, text, full: html, text
    Making new edwCorrectFileTags utility to correct file tags after upload. Moving stuff from edwChangeFormat to library to reuse in this context.
  • lines changed 87, context: html, text, full: html, text
    Moving edwAlignFastqMakeBed from edwMakeValid file to library so it can be shared.
• src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.as
  • lines changed 17, context: html, text, full: html, text
    Defining tables for contamination screening.
• src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.c
  • lines changed 355, context: html, text, full: html, text
    Defining tables for contamination screening.
• src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.sql
  • lines changed 21, context: html, text, full: html, text
    Defining tables for contamination screening.
• src/hg/encode3/encodeDataWarehouse/lib/resetEdw
  • lines changed 2, context: html, text, full: html, text
    Whitelisting Cricket under her Stanford email.
  • lines changed 12, context: html, text, full: html, text
    Adding a bunch of assemblies for use as contamination targets. Adding Katrina and Chin to white list.
• src/hg/encode3/encodeDataWarehouse/makefile
  • lines changed 4, context: html, text, full: html, text
    Added several new edw programs to higher level make.
• src/inc/cheapcgi.h
  • lines changed 5, context: html, text, full: html, text
    Making new edwCorrectFileTags utility to correct file tags after upload. Moving stuff from edwChangeFormat to library to reuse in this context.
• src/inc/genomeRangeTree.h
  • lines changed 2, context: html, text, full: html, text
    Adding functions to sum up size of all ranges in tree.
• src/inc/rangeTree.h
  • lines changed 7, context: html, text, full: html, text
    Adding functions to sum up size of all ranges in tree.
• src/lib/cheapcgi.c
  • lines changed 26, context: html, text, full: html, text
    Making new edwCorrectFileTags utility to correct file tags after upload. Moving stuff from edwChangeFormat to library to reuse in this context.
• src/lib/genomeRangeTree.c
  • lines changed 11, context: html, text, full: html, text
    Adding functions to sum up size of all ranges in tree.
• src/lib/rangeTree.c
  • lines changed 18, context: html, text, full: html, text
    Adding functions to sum up size of all ranges in tree.