39e090676e60afcf302c046587af55b3f8926727
hiram
  Thu Jul 18 10:25:14 2013 -0700
checking in Robert's code refs #9741
diff --git src/hg/lib/rmskJoined.as src/hg/lib/rmskJoined.as
new file mode 100644
index 0000000..de51df5
--- /dev/null
+++ src/hg/lib/rmskJoined.as
@@ -0,0 +1,18 @@
+table rmskJoined
+"RepeatMasker joined annotation record"
+    (
+    string chrom;      "Reference sequence chromosome or scaffold"
+    uint   chromStart; "Start position of feature in chromosome"
+    uint   chromEnd;   "End position feature in chromosome"
+    string name;       "Short Name of item"
+    uint   score;      "Score from 0-1000"
+    char[1] strand;    "+ or -"
+    uint alignStart;   "Start position of aligned portion of feature"
+    uint alignEnd;     "End position of aligned portion of feature"
+    uint reserved;     "Used as itemRgb"
+    int blockCount;    "Number of blocks"
+    int[blockCount] blockSizes; "Comma separated list of block sizes"
+    int[blockCount] blockRelStarts; "Start positions rel. to chromStart or -1 for unaligned blocks"
+    string id;         "ID to bed used in URL to link back"
+    lstring description; "Long description of item for the details page"
+    )