b763a93bef738004614cb657ccab6805f94dda8e
braney
  Thu Aug 15 19:06:39 2013 -0700
make HAL linked in by default, fix the problem with mismatched bases nothaving the right chars in them, start adding HAL to the table browser.
refs #10637

diff --git src/hg/hgTables/makefile src/hg/hgTables/makefile
index 97ea02d..f619ec8 100644
--- src/hg/hgTables/makefile
+++ src/hg/hgTables/makefile
@@ -1,28 +1,28 @@
 include ../../inc/common.mk
 
 L += -lm ${MYSQLLIBS}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 A = hgTables
 
 T = tstbug.o
 
 O = $A.o asFilter.o bam.o bedList.o bigBed.o bigWig.o \
     chromGraph.o compositeTrack.o custom.o filterFields.o \
-    gffOut.o identifiers.o intersect.o correlate.o correlatePlot.o \
+    gffOut.o hal.o identifiers.o intersect.o correlate.o correlatePlot.o \
     joining.o maf.o mainPage.o microarrayTables.o rangeHistogram.o schema.o pal.o \
     seqOut.o sumStats.o usage.o vcf.o wiggle.o wikiTrack.o galaxy.o great.o userRegions.o
 
 include ../../inc/cgi_build_rules.mk
 
 rsyncDataOpts = --times --recursive --omit-dir-times --cvs-exclude --delete
 
 my::
 	rm -f ${CGI_BIN}-${USER}/all.joiner
 	cp ../makeDb/schema/all.joiner ${CGI_BIN}-${USER}
 	rm -rf ${CGI_BIN}-${USER}/greatData
 	rsync ${rsyncDataOpts} greatData ${CGI_BIN}-${USER}/
 	chmod -R a+rX ${CGI_BIN}-${USER}/greatData
 	chmod a+r ${CGI_BIN}-${USER}/all.joiner
 	chmod g+w ${CGI_BIN}-${USER}/all.joiner