47e880c5340e100f1288c9d5d0fa1f0c6388cfea
steve
  Wed Jul 31 16:15:02 2013 -0700
Fixed so featureBits would run on hgwbeta
diff --git src/utils/qa/qaEnsGenes.csh src/utils/qa/qaEnsGenes.csh
index d681a7a..342cbe5 100755
--- src/utils/qa/qaEnsGenes.csh
+++ src/utils/qa/qaEnsGenes.csh
@@ -166,36 +166,37 @@
  else
   echo "$db is a scaffold assembly: skipping countPerChrom"
  endif
  echo
 
  echo "\n\n----------------------"
  echo "featureBits for new (dev) and old (beta) tables"
  echo "\nfeatureBits $db ensGene (on hgwdev):"
  featureBits $db ensGene
  echo "featureBits $db -countGaps ensGene (on hgwdev):"
  featureBits $db -countGaps ensGene
  echo "featureBits $db -countGaps ensGene gap (on hgwdev):"
  featureBits $db -countGaps ensGene gap
 
  if ( $db == $ensTrack ) then
+  setenv HGDB_CONF $HOME/.hg.conf.beta
   echo "\nfeatureBits $db ensGene (on hgwbeta):"
-  ssh hgwbeta featureBits $db ensGene
+  featureBits $db ensGene
   echo "featureBits $db -countGaps ensGene (on hgwbeta):"
-  ssh hgwbeta featureBits $db -countGaps ensGene
+  featureBits $db -countGaps ensGene
   echo "featureBits $db -countGaps ensGene gap (on hgwbeta):"
-  ssh hgwbeta featureBits $db -countGaps ensGene gap
+  featureBits $db -countGaps ensGene gap
  endif
  echo
 
  echo "\n\n----------------------"
  echo "check that the ensGene track is sorted by chrom:"
  echo "positionalTblCheck -verbose=2 $db ensGene\n"
  positionalTblCheck -verbose=2 $db ensGene
  echo
 
  echo "\n\n----------------------"
  echo "run Joiner Check. look for errors in the following two lines only:"
  echo "ensPep.name and ensGtp.transcript"
  echo "\nrunning joinerCheck for $db on ensemblTranscriptId:"
  joinerCheck -keys -database=$db -identifier=ensemblTranscriptId ~/kent/src/hg/makeDb/schema/all.joiner
 
