e63e8e4ebaba9f43a6a65f02ee13adf32d7f287b
kent
  Thu Jul 25 13:19:47 2013 -0700
Made it so linefile on gzipped files doesn't abort with an error message if you close it before reading it all.
diff --git src/lib/linefile.c src/lib/linefile.c
index fda30d8..d53e7b1 100644
--- src/lib/linefile.c
+++ src/lib/linefile.c
@@ -637,33 +637,35 @@
 }
 
 void lineFileNeedNext(struct lineFile *lf, char **retStart, int *retSize)
 /* Fetch next line from file.  Squawk and die if it's not there. */
 {
 if (!lineFileNext(lf, retStart, retSize))
     lineFileUnexpectedEnd(lf);
 }
 
 void lineFileClose(struct lineFile **pLf)
 /* Close up a line file. */
 {
 struct lineFile *lf;
 if ((lf = *pLf) != NULL)
     {
-    if (lf->pl != NULL)
+    struct pipeline *pl = lf->pl;
+    if (pl != NULL)
         {
-        pipelineWait(lf->pl);
+	pipelineSetNoAbort(pl);
+        pipelineWait(pl);
         pipelineFree(&lf->pl);
         }
     else if (lf->fd > 0 && lf->fd != fileno(stdin))
 	{
 	close(lf->fd);
 	freeMem(lf->buf);
 	}
 #ifdef USE_TABIX
     else if (lf->tabix != NULL)
 	{
 	if (lf->tabixIter != NULL)
 	    ti_iter_destroy(lf->tabixIter);
 	ti_close(lf->tabix);
 	}
 #endif // USE_TABIX