File Changes for hiram

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v288_base to v289_preview (2013-08-19 to 2013-08-26) v289

src/hg/makeDb/doc/ailMel1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/anoCar2.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/bosTau7.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/calJac3.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/canFam3.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/cavPor3.txt
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  adding ucscToINSDC track refs #11348
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/cerSim1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/chrPic1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/danRer7.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/dasNov3.txt
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src/hg/makeDb/doc/felCat5.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/fr3.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/gadMor1.txt
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src/hg/makeDb/doc/galGal4.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/geoFor1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/hetGla2.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/hg19.txt
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  running lastz for fr3 refs #10272
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  done with fr3 lastz refs #10272
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  starting lipVex1 lastz refs #10272
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/latCha1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/loxAfr3.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/macEug2.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/melGal1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/melUnd1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/musFur1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/myoLuc2.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/oreNil2.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/oryCun2.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/otoGar3.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/petMar2.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/rheMac3.txt
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src/hg/makeDb/doc/rn5.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/saiBol1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/sarHar1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/speTri2.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/susScr3.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/triMan1.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/doc/turTru2.txt
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  adding ucscToINSDC track refs #11348
src/hg/makeDb/schema/all.joiner
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  adding ucscToINSDC checking refs #11348
src/hg/makeDb/trackDb/gator/trackDb.chainNet.ra
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  correct overrides for chain net settings on hg19 vs. allMis1 refs #8750
src/hg/makeDb/trackDb/gator/trackDb.ra
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  correct overrides for chain net settings on hg19 vs. allMis1 refs #8750
src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
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  correct overrides for chain net settings on hg19 vs. allMis1 refs #8750
src/hg/utils/automation/HgAutomate.pm
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  moving to San Diego compute environment, adding the ku kluster to the mix refs #8875
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  fixup reference to hgcentraltest as localhost instead of genome-testdb refs #8875
src/hg/utils/automation/doBlastzChainNet.pl
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  moving to San Diego compute environment, adding the ku kluster to the mix refs #8875
src/hg/utils/automation/doCpgIslands.pl
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  moving to San Diego compute environment, adding the ku kluster to the mix refs #8875
src/hg/utils/automation/doGenscan.pl
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  moving to San Diego compute environment, adding the ku kluster to the mix refs #8875
src/hg/utils/automation/doHgNearBlastp.pl
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  moving to San Diego compute environment, adding the ku kluster to the mix refs #8875
src/hg/utils/automation/doRepeatMasker.pl
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  fixup use of ku kluster for options to engines for RM refs #8875
src/hg/utils/phyloTrees/placentals.txt
- lines changed 7, context: html, text, full: html, text
  adding lipVex and myoBri Brandt's Myotis (bat) - Myotis brandtii and Yangtze River Dolphin Lipotes vexillifer refs @10272
src/inc/common.mk
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  adding -lstdc++ and -lrt to all MYSQLLIBS in case of MySQL v5.6 refs #9149
src/utils/qa/weeklybld/buildEnv.csh
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  v289 preview1
src/utils/qa/weeklybld/doHgTablesTestRobot.csh
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  adding steve to the notification email refs #8875
src/utils/qa/weeklybld/doNewBranch.csh
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  using sendmail instead of mail because this mail is different than before refs #8875

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