There are two ways to navigate to the VAI: (1) From the "Tools"
menu, follow the "Variant Annotation Integrator" link. (2)
After uploading a custom track, hit the "go to variant annotation
integrator" button. The user's guide is at the bottom of the page,
under "Using the Variant Annotation Integrator."
Thank you to Angie Hinrichs, Bob Kuhn, Brian Raney, Brooke Rhead, and
Jonathan Casper for their input and work on this feature.
-
- 2 July 2013
- - Assembly Data Hubs
-
-
- We are pleased to announce a new feature in the UCSC Genome Browser:
- Assembly Data Hubs.
-
-
- Assembly Data Hubs extend the functionality of Track Data Hubs to
- assemblies that are not hosted natively on the Browser. Assembly Data
- Hubs were developed to address the increasing need for researchers to
- annotate sequence for which UCSC does not provide an annotation
- database. They allow researchers to include the underlying reference
- sequence, as well as data tracks that annotate that sequence. Sequence
- is stored in the UCSC twoBit format, and the annotation tracks are
- stored in the same manner as Track Data Hubs.
-
-
- To read more about using Assembly Data Hubs, or about creating your
- own, please see these guides:
-
-
-
- http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html
-
-
-
- http://genomewiki.ucsc.edu/index.php/Assembly_Hubs
-
-
- Many thanks to Hiram Clawson, Brian Raney, and Pauline Fujita for their work on this feature.
-
-
-
2 July 2013
- Assembly Data Hubs: Assembly Data Hubs extend the
functionality of Track Data Hubs to assemblies that are not hosted
natively on the Browser.
Read more.
- -->
2 July 2013
- New Gene Alleles feature on the details pages of UCSC genes:
For each protein-coding gene in the UCSC Genes track, variant data from
the 2,184 (per autosome) phased chromosomes from Phase 1 of the 1000
Genomes Project have been distilled into "gene haplotype
alleles."
Read more.
28 June 2013
- New UCSC Genes Track Released for GRCh37/hg19: We're happy
to announce the release of an updated UCSC Genes track for the
GRCh37/hg19 human Genome Browser.
Read more.
27 June 2013
- New Official European Mirror Released: Announcing
an official mirror for European users, with automatic
redirection.
Read more.
-
- 26 June 2013
- - Suggestion Box Released:
- Due to popular demand, we have created a suggestion box for track, assembly,
- tool, and other feature requests.
- Read more.
-