6a669653cb62b01c69de4da19c4baa27cf625e40
braney
  Sun Sep 1 09:37:57 2013 -0700
add snake configuration options, only link in HAL libraries in hgTracks,temporarily(?) remove support for snakes based on chains #10637

diff --git src/inc/common.mk src/inc/common.mk
index 1e149f9..06899b6 100644
--- src/inc/common.mk
+++ src/inc/common.mk
@@ -25,31 +25,31 @@
   endif
 endif
 
 
 # autodetect UCSC installation of hal:
 ifeq (${HALDIR},)
     HALDIR = /hive/groups/browser/hal
     ifneq ($(wildcard ${HALDIR}),)
         ifeq (${USE_HAL},)
           USE_HAL=1
         endif
     endif
 endif
 
 ifeq (${USE_HAL},1)
-    L+=${HALDIR}/hal/lib/halMaf.a ${HALDIR}/hal/lib/halChain.a ${HALDIR}/hal/lib/halMaf.a ${HALDIR}/hal/lib/halLiftover.a ${HALDIR}/hal/lib/halLod.a ${HALDIR}/hal/lib/halLib.a ${HALDIR}/sonLib/lib/sonLib.a ${HALDIR}/hdf5-1.8.11/hdf5//lib/libhdf5_cpp.a ${HALDIR}/hdf5-1.8.11/hdf5//lib/libhdf5.a ${HALDIR}/hdf5-1.8.11/hdf5//lib/libhdf5_hl.a 
+    HALLIBS=${HALDIR}/hal/lib/halMaf.a ${HALDIR}/hal/lib/halChain.a ${HALDIR}/hal/lib/halMaf.a ${HALDIR}/hal/lib/halLiftover.a ${HALDIR}/hal/lib/halLod.a ${HALDIR}/hal/lib/halLib.a ${HALDIR}/sonLib/lib/sonLib.a ${HALDIR}/hdf5-1.8.11/hdf5//lib/libhdf5_cpp.a ${HALDIR}/hdf5-1.8.11/hdf5//lib/libhdf5.a ${HALDIR}/hdf5-1.8.11/hdf5//lib/libhdf5_hl.a 
     HG_DEFS+=-DUSE_HAL
     HG_INC+=-I${HALDIR}/hal/chain/inc/
 endif
 
 
 # libssl: disabled by default
 ifeq (${USE_SSL},1)
     ifneq (${SSL_DIR}, "/usr/include/openssl")
         L+=-L${SSL_DIR}/lib
         HG_INC+=-I${SSL_DIR}/include
     endif
     L+=-lssl -lcrypto
     HG_DEFS+=-DUSE_SSL
 endif