11607785b0d3ceaa8e7bad88fb53a4e15260aa4c
brianlee
  Thu Sep 26 11:59:32 2013 -0700
Adding news release and credits/FAQ updates for new alligator assembly allMis1 refs #8750
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                 SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A>
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           <P>
           To receive announcements of new genome 
           assembly releases, new software features, updates and 
           training seminars by email, subscribe to the
           <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
           TARGET=_blank>genome-announce</A> mailing list.</P>
 
     <!-- start news -->
+        <p>
+        <font face="courier" size="3"><b>26 September 2013 -
+        New American Alligator (allMis1) Assembly Now Available in the Genome Browser</b></font>
+        <p>
+        A Genome Browser is now available for the American alligator
+        (<em>Alligator mississippiensis</em>) assembly released
+        August 2012 by the International Crocodilian Genomes Working Group
+        (version allMis0.2, UCSC version allMis1).
+        Please note the <a href="http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKHW01"
+        target="_blank">assembly construction details</a>.
+        For more information and statistics about this assembly,
+        see the NCBI assembly record for
+        <a href="http://www.ncbi.nlm.nih.gov/assembly/406428/"
+        target="_blank">allMis0.2</a>.  There are 14,645 scaffolds
+        with a total size of 2,174,259,888 bases.
+        <p>
+        Bulk downloads of the sequence and annotation data may be obtained from the Genome
+        Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/allMis1/">FTP server</a>
+        or the
+        <a href="http://hgdownload.cse.ucsc.edu/downloads.html#american_alligator">Downloads</a>
+        page. Please observe the
+        <a href="goldenpath/credits.html#american_alligator_use">conditions for use</a>
+        when accessing and using these data sets. The annotation tracks for this browser
+        were generated by UCSC and collaborators worldwide. See the
+        <a href="goldenpath/credits.html#american_alligator_credits">Credits</a> page for a detailed
+        list of the organizations and individuals who contributed to this release.
+        </p>
+
     	<font face="courier" size="3"><b>11 September 2013 -
         New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font>
         <p>
         We are pleased to announce the release of a Genome Browser for the March 2013
         assembly of alpaca, <em>Vicugna pacos</em> (Broad Vicugna_pacos-2.0.1, UCSC version
         vicPac2). The whole genome shotgun assembly was provided by
         <a href="http://www.broadinstitute.org/"
         target="_blank">The Broad Institute</a>.
         There are 276,725 scaffolds with a total size of 2,172,191,320 bases.
         </p>
         <p>
         Bulk downloads of the sequence and annotation data are available via the Genome
         Browser
         <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/vicPac2/">FTP server</a>
         or the
         <a href="http://hgdownload.cse.ucsc.edu/downloads.html#alpaca">Downloads</a>
         page. These data have
         <a href="/goldenPath/credits.html#alpaca_credits">specific conditions for use</a>.
         The alpaca (vicPac2) browser annotation tracks were generated by UCSC and
         collaborators worldwide. See the
         <a href="/goldenPath/credits.html#alpaca_credits">Credits</a> page for a detailed
         list of the organizations and individuals who contributed to this release.
         </p>
 
-        <font face="courier" size="3"><b>04 September 2013 -
-        New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font>
+        <!-- staged for archive use
         <p>
-        We are pleased to announce the release of a Genome Browser for the November 2012
-        assembly of tenrec, <em>Echinops telfairi</em> (Broad EchTel2.0, UCSC version
-        echTel2). The whole genome shotgun assembly was provided by
-        <a href="http://www.broadinstitute.org/"
-        target="_blank">The Broad Institute</a>.
-        There are 8,402 scaffolds with a total size of 2,947,024,286 bases.
-        </p>
-        <p>
-        Bulk downloads of the sequence and annotation data are available via the Genome
-        Browser
-        <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/echTel2/">FTP server</a>
-        or the
-        <a href="http://hgdownload.cse.ucsc.edu/downloads.html#tenrec">Downloads</a>
-        page. These data have
-        <a href="/goldenPath/credits.html#tenrec_credits">specific conditions for use</a>.
-        The tenrec (echTel2) browser annotation tracks were generated by UCSC and
-        collaborators worldwide. See the
-        <a href="/goldenPath/credits.html#tenrec_credits">Credits</a> page for a detailed
-        list of the organizations and individuals who contributed to this release.
+        <font face="courier" size="3"><b>26 September 2013 -
+        New Aligator (allMis1) Assembly Now Available in the Genome Browser</b></font>
+        <a href="goldenPath/newsarch.html#092613">Read more</a>.
         </p>
 
-        <!-- staged for archive use
         <p>
         <font face="courier" size="3"><b>11 September 2013 -
         New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font>
         <a href="goldenPath/newsarch.html#091113">Read more</a>.
         </p>
 
-	<p>
-        <font face="courier" size="3"><b>04 September 2013 -
-        New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font>
-        <a href="goldenPath/newsarch.html#090413">Read more</a>.
-        </p>
         -->
 
         <!-- start archives -->
 	<hr>
         <p>
 	<p>
         <font face="courier" size="3"><b>04 September 2013 -
+        New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font>
+        <a href="goldenPath/newsarch.html#090413">Read more</a>.
+        </p>
+
+        <font face="courier" size="3"><b>04 September 2013 -
         New Sheep (oviAri3) Assembly Now Available in the Genome Browser </b></font>
         <a href="goldenPath/newsarch.html#090413">Read more</a>.
         </p>
 
         <p>
         <font face="courier" size="3"><b>22 August 2013
         - Three New Human Variation Tracks Released:</b></font> We are
         pleased to announce the release of three tracks that describe human
         genetic variation.
         <a href="goldenPath/newsarch.html#082213">Read more</a>.
         </p>
 
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