11607785b0d3ceaa8e7bad88fb53a4e15260aa4c brianlee Thu Sep 26 11:59:32 2013 -0700 Adding news release and credits/FAQ updates for new alligator assembly allMis1 refs #8750 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 7981e2a..ba6dcc2 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,110 +1,120 @@ <!-- News Section ============================================- --> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> + <p> + <font face="courier" size="3"><b>26 September 2013 - + New American Alligator (allMis1) Assembly Now Available in the Genome Browser</b></font> + <p> + A Genome Browser is now available for the American alligator + (<em>Alligator mississippiensis</em>) assembly released + August 2012 by the International Crocodilian Genomes Working Group + (version allMis0.2, UCSC version allMis1). + Please note the <a href="http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKHW01" + target="_blank">assembly construction details</a>. + For more information and statistics about this assembly, + see the NCBI assembly record for + <a href="http://www.ncbi.nlm.nih.gov/assembly/406428/" + target="_blank">allMis0.2</a>. There are 14,645 scaffolds + with a total size of 2,174,259,888 bases. + <p> + Bulk downloads of the sequence and annotation data may be obtained from the Genome + Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/allMis1/">FTP server</a> + or the + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#american_alligator">Downloads</a> + page. Please observe the + <a href="goldenpath/credits.html#american_alligator_use">conditions for use</a> + when accessing and using these data sets. The annotation tracks for this browser + were generated by UCSC and collaborators worldwide. See the + <a href="goldenpath/credits.html#american_alligator_credits">Credits</a> page for a detailed + list of the organizations and individuals who contributed to this release. + </p> + <font face="courier" size="3"><b>11 September 2013 - New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font> <p> We are pleased to announce the release of a Genome Browser for the March 2013 assembly of alpaca, <em>Vicugna pacos</em> (Broad Vicugna_pacos-2.0.1, UCSC version vicPac2). The whole genome shotgun assembly was provided by <a href="http://www.broadinstitute.org/" target="_blank">The Broad Institute</a>. There are 276,725 scaffolds with a total size of 2,172,191,320 bases. </p> <p> Bulk downloads of the sequence and annotation data are available via the Genome Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/vicPac2/">FTP server</a> or the <a href="http://hgdownload.cse.ucsc.edu/downloads.html#alpaca">Downloads</a> page. These data have <a href="/goldenPath/credits.html#alpaca_credits">specific conditions for use</a>. The alpaca (vicPac2) browser annotation tracks were generated by UCSC and collaborators worldwide. See the <a href="/goldenPath/credits.html#alpaca_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> - <font face="courier" size="3"><b>04 September 2013 - - New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font> + <!-- staged for archive use <p> - We are pleased to announce the release of a Genome Browser for the November 2012 - assembly of tenrec, <em>Echinops telfairi</em> (Broad EchTel2.0, UCSC version - echTel2). The whole genome shotgun assembly was provided by - <a href="http://www.broadinstitute.org/" - target="_blank">The Broad Institute</a>. - There are 8,402 scaffolds with a total size of 2,947,024,286 bases. - </p> - <p> - Bulk downloads of the sequence and annotation data are available via the Genome - Browser - <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/echTel2/">FTP server</a> - or the - <a href="http://hgdownload.cse.ucsc.edu/downloads.html#tenrec">Downloads</a> - page. These data have - <a href="/goldenPath/credits.html#tenrec_credits">specific conditions for use</a>. - The tenrec (echTel2) browser annotation tracks were generated by UCSC and - collaborators worldwide. See the - <a href="/goldenPath/credits.html#tenrec_credits">Credits</a> page for a detailed - list of the organizations and individuals who contributed to this release. + <font face="courier" size="3"><b>26 September 2013 - + New Aligator (allMis1) Assembly Now Available in the Genome Browser</b></font> + <a href="goldenPath/newsarch.html#092613">Read more</a>. </p> - <!-- staged for archive use <p> <font face="courier" size="3"><b>11 September 2013 - New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font> <a href="goldenPath/newsarch.html#091113">Read more</a>. </p> - <p> - <font face="courier" size="3"><b>04 September 2013 - - New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font> - <a href="goldenPath/newsarch.html#090413">Read more</a>. - </p> --> <!-- start archives --> <hr> <p> <p> <font face="courier" size="3"><b>04 September 2013 - + New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font> + <a href="goldenPath/newsarch.html#090413">Read more</a>. + </p> + + <font face="courier" size="3"><b>04 September 2013 - New Sheep (oviAri3) Assembly Now Available in the Genome Browser </b></font> <a href="goldenPath/newsarch.html#090413">Read more</a>. </p> <p> <font face="courier" size="3"><b>22 August 2013 - Three New Human Variation Tracks Released:</b></font> We are pleased to announce the release of three tracks that describe human genetic variation. <a href="goldenPath/newsarch.html#082213">Read more</a>. </p> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>