Commits for hiram

v289_base to v290_preview (2013-09-09 to 2013-09-16) v290

• begin display of 100-way conservation track refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.100way.ra - lines changed 239, context: html, text, full: html, text
• begin display of 100-way conservation track refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
• temporary track title refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.100way.ra - lines changed 1, context: html, text, full: html, text
• adding Amur tiger refs #10272
  • src/hg/utils/phyloTrees/113way.commonNames.nh - lines changed 113, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/113way.nh - lines changed 112, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/113way.scientificNames.nh - lines changed 113, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/commonNames.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/makefile - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/scientificNames.sh - lines changed 1, context: html, text, full: html, text
• running lastz panTig1 Amur tiger refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 64, context: html, text, full: html, text
• more problems with white space only diffs refs #11571
  • src/utils/git-reports/git-reports.c - lines changed 15, context: html, text, full: html, text
• more problems with white space only diffs refs #11571
  • src/utils/git-reports/git-reports.c - lines changed 2, context: html, text, full: html, text
• the email address is ann not zweig refs #11650
  • src/utils/qa/weeklybld/doNewBranch.csh - lines changed 1, context: html, text, full: html, text
• allSin1 lastz done and swapping panTig1 refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 19, context: html, text, full: html, text
• no frames until they are loaded refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.100way.ra - lines changed 1, context: html, text, full: html, text
• lifted uc16 and ux16 from hg18 for ultra conserved elements to view in 100-way alignment refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 24, context: html, text, full: html, text
• add hg18 lifted note and icon to the ultra conserved tracks;
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 4, context: html, text, full: html, text
• ready to display frames refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.100way.ra - lines changed 1, context: html, text, full: html, text
• forgot a couple of organisms on the 100-way refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.100way.ra - lines changed 2, context: html, text, full: html, text
• adding extra clade divisions in the 100-way display refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.100way.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 5, context: html, text, full: html, text
• turn on phastCons wiggle and most conserved elements refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.100way.ra - lines changed 43, context: html, text, full: html, text
• hg19 100way phylo tree diagram refs #10272
  • src/hg/htdocs/images/phylo/hg19_100way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• correctly set default codon species and adding hg19_100way.png image refs #10272
  • src/hg/makeDb/trackDb/human/hg19/trackDb.100way.ra - lines changed 2, context: html, text, full: html, text
• initial contents, needs updated species list refs #10272
  • src/hg/makeDb/trackDb/human/hg19/cons100way.html - lines changed 447, context: html, text, full: html, text
• preview 1 day for v290 refs #11650
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text