865209d142ee63fe70695c1a71d7fd2aeb370536
kent
  Thu Aug 8 12:57:54 2013 -0700
Streamlining unit test.
diff --git src/utils/raToStructGen/testIt src/utils/raToStructGen/testIt
index 074365f..85d7b06 100755
--- src/utils/raToStructGen/testIt
+++ src/utils/raToStructGen/testIt
@@ -1,6 +1,9 @@
 #!/bin/tcsh -efx
-#rm -rf testOut
-#mkdir testOut
-autoSql test.as testOut/testStruct
-raToStructGen -testMain test.as testOut/testFoo.c -required=readCount,baseCount,readSizeMean,readSizeStd,readSizeMin,readSizeMax,qualMean,qualStd,qualMin,qualMax,qualType,qualZero,atRatio,aRatio,cRatio,gRatio,tRatio,nRatio,qualPos,aAtPos,cAtPos,gAtPos,tAtPos,nAtPos -computed=id,fileId,sampleCount,sampleFileName
-make testOut/testFoo.o
+cd testOut
+autoSql test.as testStruct
+raToStructGen -testMain test.as testRaToStruct.c -required=readCount,baseCount,readSizeMean,readSizeStd,readSizeMin,readSizeMax,qualMean,qualStd,qualMin,qualMax,qualType,qualZero,atRatio,aRatio,cRatio,gRatio,tRatio,nRatio,qualPos,aAtPos,cAtPos,gAtPos,tAtPos,nAtPos -computed=id,fileId,sampleCount,sampleFileName
+make
+rehash
+testRaToStruct test.ra > test.out
+diff test.expected test.out
+cd ..