b71177b93318749c2e71dc280d124793bd526a45 luvina Tue Sep 10 11:14:03 2013 -0700 added info for new alpaca assembly (vicPac2) diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 318be8f..2fee8ea 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -13,102 +13,98 @@ SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> - <font face="courier" size="3"><b>04 September 2013 - - New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font> + <font face="courier" size="3"><b>11 September 2013 - + New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font> <p> - We are pleased to announce the release of a Genome Browser for the November 2012 - assembly of tenrec, <em>Echinops telfairi</em> (Broad EchTel2.0, UCSC version - echTel2). The whole genome shotgun assembly was provided by + We are pleased to announce the release of a Genome Browser for the March 2013 + assembly of alpaca, <em>Vicugna pacos</em> (Broad Vicugna_pacos-2.0.1, UCSC version + vicPac2). The whole genome shotgun assembly was provided by <a href="http://www.broadinstitute.org/" target="_blank">The Broad Institute</a>. - There are 8,402 scaffolds with a total size of 2,947,024,286 bases. + There are 276,725 scaffolds with a total size of 2,172,191,320 bases. </p> <p> Bulk downloads of the sequence and annotation data are available via the Genome Browser - <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/echTel2/">FTP server</a> + <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/vicPac2/">FTP server</a> or the - <a href="http://hgdownload.cse.ucsc.edu/downloads.html#tenrec">Downloads</a> + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#vicPac">Downloads</a> page. These data have - <a href="/goldenPath/credits.html#tenrec_credits">specific conditions for use</a>. - The tenrec (echTel2) browser annotation tracks were generated by UCSC and + <a href="/goldenPath/credits.html#vicpac_credits">specific conditions for use</a>. + The alpaca (vicPac2) browser annotation tracks were generated by UCSC and collaborators worldwide. See the - <a href="/goldenPath/credits.html#tenrec_credits">Credits</a> page for a detailed + <a href="/goldenPath/credits.html#vicpac_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> <font face="courier" size="3"><b>04 September 2013 - - New Sheep (oviAri3) Assembly Now Available in the Genome Browser</b></font> + New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font> <p> - We are pleased to announce the release of a Genome Browser for the August 2012 - assembly of sheep, <em>Ovis aries</em> (ISGC Oar_v3.1, UCSC version - oviAri3). The whole genome shotgun assembly was provided by the - <a href="http://www.sheephapmap.org" - target="_blank">International Sheep Genomics Consortium</a>. - There are 5,698 scaffolds with a total size of 2,619,054,388 bases. + We are pleased to announce the release of a Genome Browser for the November 2012 + assembly of tenrec, <em>Echinops telfairi</em> (Broad EchTel2.0, UCSC version + echTel2). The whole genome shotgun assembly was provided by + <a href="http://www.broadinstitute.org/" + target="_blank">The Broad Institute</a>. + There are 8,402 scaffolds with a total size of 2,947,024,286 bases. </p> <p> Bulk downloads of the sequence and annotation data are available via the Genome Browser - <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/oviAri3/">FTP server</a> + <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/echTel2/">FTP server</a> or the - <a href="http://hgdownload.cse.ucsc.edu/downloads.html#sheep">Downloads</a> + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#tenrec">Downloads</a> page. These data have - <a href="/goldenPath/credits.html#sheep_credits">specific conditions for use</a>. - The sheep (oviAri3) browser annotation tracks were generated by UCSC and + <a href="/goldenPath/credits.html#tenrec_credits">specific conditions for use</a>. + The tenrec (echTel2) browser annotation tracks were generated by UCSC and collaborators worldwide. See the - <a href="/goldenPath/credits.html#sheep_credits">Credits</a> page for a detailed + <a href="/goldenPath/credits.html#tenrec_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> <!-- staged for archive use <p> - <font face="courier" size="3"><b>04 September 2013 - - New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font> - <a href="goldenPath/newsarch.html#090413">Read more</a>. + <font face="courier" size="3"><b>11 September 2013 - + New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font> + <a href="goldenPath/newsarch.html#091113">Read more</a>. </p> + <p> <font face="courier" size="3"><b>04 September 2013 - - New Sheep (oviAri3) Assembly Now Available in the Genome Browser</b></font> + New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font> <a href="goldenPath/newsarch.html#090413">Read more</a>. </p> - --> <!-- start archives --> <hr> <p> + <p> + <font face="courier" size="3"><b>04 September 2013 - + New Sheep (oviAri3) Assembly Now Available in the Genome Browser</b></font> + <a href="goldenPath/newsarch.html#090413">Read more</a>. + </p> <p> <font face="courier" size="3"><b>22 August 2013 - Three New Human Variation Tracks Released:</b></font> We are pleased to announce the release of three tracks that describe human genetic variation. <a href="goldenPath/newsarch.html#082213">Read more</a>. </p> - <p> - <font face="courier" size="3"><b>22 July 2013 - - Variant Annotation Integrator:</b></font> In order to assist - researchers in annotating and prioritizing thousands of variant - calls from sequencing projects, we have developed the Variant - Annotation Integrator (VAI). - <a href="goldenPath/newsarch.html#072213">Read more</a>. - </p> - </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>