b6197433e4a9ced016a402ce7f5454048ca4c85f angie Tue Sep 17 11:59:05 2013 -0700 Fixing a URL (copy-paste error). diff --git src/hg/hgVai/hgVai.c src/hg/hgVai/hgVai.c index 1ed0fc5..c95ed1d 100644 --- src/hg/hgVai/hgVai.c +++ src/hg/hgVai/hgVai.c @@ -411,31 +411,32 @@ return formatDesc("http://genetics.bwh.harvard.edu/pph2/", "PolyPhen-2", "with HumVar training set " "(D = probably damaging, P = possibly damaging, B = benign)", doHtml); else errAbort("dbNsfpDescFromTableName: invalid PolyPhen2 subset type (%d)", subset); } else if (sameString(tableName, "dbNsfpMutationTaster")) return formatDesc("http://www.mutationtaster.org/", "MutationTaster", "(A = disease causing automatic, D = disease causing, " "N = polymorphism, P = polymorphism automatic)", doHtml); else if (sameString(tableName, "dbNsfpMutationAssessor")) return formatDesc("http://mutationassessor.org/", "MutationAssessor", "(high or medium: predicted functional; " "low or neutral: predicted non-functional)", doHtml); else if (sameString(tableName, "dbNsfpLrt")) - return formatDesc("http://www.mutationtaster.org/", "Likelihood ratio test (LRT)", + return formatDesc("http://www.genetics.wustl.edu/jflab/lrt_query.html", + "Likelihood ratio test (LRT)", "(D = deleterious, N = Neutral, U = unknown)", doHtml); else if (sameString(tableName, "dbNsfpGerpNr")) return formatDesc("http://mendel.stanford.edu/SidowLab/downloads/gerp/index.html", "GERP++", "Neutral Rate (NR)", doHtml); else if (sameString(tableName, "dbNsfpGerpRs")) return formatDesc("http://mendel.stanford.edu/SidowLab/downloads/gerp/index.html", "GERP++", "Rejected Substitutions (RS)", doHtml); else if (sameString(tableName, "dbNsfpInterPro")) return formatDesc("http://www.ebi.ac.uk/interpro/", "InterPro", "protein domains", doHtml); return NULL; } struct slName *findDbNsfpTables() /* See if this database contains dbNSFP tables. */ {