File Changes for braney

v291_preview2 to v291_base (2013-10-14 to 2013-10-21) v291

• src/hg/hgTables/hal.c
  • lines changed 64, context: html, text, full: html, text
    implement maf output in table browser
• src/hg/hgTables/hgTables.c
  • lines changed 4, context: html, text, full: html, text
    implement maf output in table browser
• src/hg/hgTables/hgTables.h
  • lines changed 3, context: html, text, full: html, text
    implement maf output in table browser
• src/hg/hgTables/joining.c
  • lines changed 12, context: html, text, full: html, text
    implement maf output in table browser
• src/hg/hgTables/mainPage.c
  • lines changed 8, context: html, text, full: html, text
    implement maf output in table browser
• src/hg/hgTables/makefile
  • lines changed 1, context: html, text, full: html, text
    implement maf output in table browser
• src/hg/makeDb/genbank/etc/euronode-copy
  • lines changed 1, context: html, text, full: html, text
    take out verbose flag on rsyncs to eurotoad
• src/hg/makeDb/genbank/etc/euronode-dbload
  • lines changed 2, context: html, text, full: html, text
    take out verbose flag on rsyncs to eurotoad
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 138, context: html, text, full: html, text
    reorganize the genbank db lists to be prioritized
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 161, context: html, text, full: html, text
    reorganize the genbank db lists to be prioritized
• src/hg/pslPretty/makefile
  • lines changed 20, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/expected/bad.axt
  • lines changed 0, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/expected/bad.output
  • lines changed 2, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/expected/dnax.axt
  • lines changed 8, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/expected/empty.axt
  • lines changed 0, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/expected/empty.output
  • lines changed 1, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/expected/justComments.axt
  • lines changed 0, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/expected/justComments.output
  • lines changed 0, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/input/bad.psl
  • lines changed 1, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/input/empty.psl
  • lines changed 0, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/pslPretty/test/input/justComments.psl
  • lines changed 2, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate
    
• src/hg/utils/otto/gwas/checkGwas.sh
  • lines changed 3, context: html, text, full: html, text
    check in some changes to the GWAS otto scripts
• src/hg/utils/otto/gwas/makefile
  • lines changed 1, context: html, text, full: html, text
    check in some changes to the GWAS otto scripts
• src/hg/utils/otto/gwas/perlParser.pl
  • lines changed 4, context: html, text, full: html, text
    check in some changes to the GWAS otto scripts
• src/hg/utils/otto/gwas/validateGwas.sh
  • lines changed 1, context: html, text, full: html, text
    check in some changes to the GWAS otto scripts
• src/lib/psl.c
  • lines changed 14, context: html, text, full: html, text
    fix a problem in pslOpen that caused a hang is the psl file only hadcomments. Add tests to pslPretty to validate