31ddc83c4a076344b767b4551de3594851afc14c
brianlee
  Fri Oct 11 16:12:15 2013 -0700
Adding news release item about DGV update track refs #11200
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           <P>
           To receive announcements of new genome 
           assembly releases, new software features, updates and 
           training seminars by email, subscribe to the
           <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
           TARGET=_blank>genome-announce</A> mailing list.</P>
 
     <!-- start news -->
         <p>
+        <font face="courier" size="3"><b>11 October 2013 -
+        Updated DGV Structural Variation Track</b></font>
+        <p>
+        The UCSC Genome Browser is pleased to announce an updated DGV Structural Variant
+        track to reflect the official launch of the new  <a href="http://dgv.tcag.ca/dgv/app/home"
+        target="_blank">Database of Genomic Variants</a>. The new release includes a number of
+        updates and corrections and completes DGV's transition from their Beta version as
+        they retire their original site for the new and improved site. For more background on
+        DGV's changes, please see DGV's <a href="http://dgv.tcag.ca/dgv/app/news"
+        target="_blank">June 2013 newsletter</a>.
+        </p>
+
+        <p>
         <font face="courier" size="3"><b>26 September 2013 -
         New American Alligator (allMis1) Assembly Now Available in the Genome Browser</b></font>
         <p>
         A Genome Browser is now available for the American alligator
         (<em>Alligator mississippiensis</em>) assembly released
         August 2012 by the International Crocodilian Genomes Working Group
         (version allMis0.2, UCSC version allMis1).
         Please note the <a href="http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKHW01"
         target="_blank">assembly construction details</a>.
         For more information and statistics about this assembly,
         see the NCBI assembly record for
         <a href="http://www.ncbi.nlm.nih.gov/assembly/406428/"
         target="_blank">allMis0.2</a>.  There are 14,645 scaffolds
         with a total size of 2,174,259,888 bases.
         <p>
         Bulk downloads of the sequence and annotation data may be obtained from the Genome
         Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/allMis1/">FTP server</a>
         or the
         <a href="http://hgdownload.cse.ucsc.edu/downloads.html#american_alligator">Downloads</a>
         page. Please observe the
         <a href="goldenpath/credits.html#american_alligator_use">conditions for use</a>
         when accessing and using these data sets. The annotation tracks for this browser
         were generated by UCSC and collaborators worldwide. See the
         <a href="goldenpath/credits.html#american_alligator_credits">Credits</a> page for a detailed
         list of the organizations and individuals who contributed to this release.
         </p>
 
-    	<font face="courier" size="3"><b>11 September 2013 -
-        New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font>
-        <p>
-        We are pleased to announce the release of a Genome Browser for the March 2013
-        assembly of alpaca, <em>Vicugna pacos</em> (Broad Vicugna_pacos-2.0.1, UCSC version
-        vicPac2). The whole genome shotgun assembly was provided by
-        <a href="http://www.broadinstitute.org/"
-        target="_blank">The Broad Institute</a>.
-        There are 276,725 scaffolds with a total size of 2,172,191,320 bases.
-        </p>
+
+        <!-- staged for archive use
         <p>
-        Bulk downloads of the sequence and annotation data are available via the Genome
-        Browser
-        <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/vicPac2/">FTP server</a>
-        or the
-        <a href="http://hgdownload.cse.ucsc.edu/downloads.html#alpaca">Downloads</a>
-        page. These data have
-        <a href="/goldenPath/credits.html#alpaca_credits">specific conditions for use</a>.
-        The alpaca (vicPac2) browser annotation tracks were generated by UCSC and
-        collaborators worldwide. See the
-        <a href="/goldenPath/credits.html#alpaca_credits">Credits</a> page for a detailed
-        list of the organizations and individuals who contributed to this release.
+        <font face="courier" size="3"><b>11 October 2013 -
+        Updated DGV Structural Variation Track</b></font>
+        <a href="goldenPath/newsarch.html#101113">Read more</a>.
         </p>
 
-        <!-- staged for archive use
         <p>
         <font face="courier" size="3"><b>26 September 2013 -
         New American Alligator (allMis1) Assembly Now Available in the Genome Browser</b></font>
         <a href="goldenPath/newsarch.html#092613">Read more</a>.
         </p>
 
+        -->
+
+
+        <!-- start archives -->
+	<hr>
         <p>
         <font face="courier" size="3"><b>11 September 2013 -
         New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font>
         <a href="goldenPath/newsarch.html#091113">Read more</a>.
         </p>
 
-        -->
-
-        <!-- start archives -->
-	<hr>
-        <p>
 	<p>
         <font face="courier" size="3"><b>04 September 2013 -
         New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font>
         <a href="goldenPath/newsarch.html#090413">Read more</a>.
         </p>
 
         <font face="courier" size="3"><b>04 September 2013 -
         New Sheep (oviAri3) Assembly Now Available in the Genome Browser </b></font>
         <a href="goldenPath/newsarch.html#090413">Read more</a>.
         </p>
 
-        <p>
-        <font face="courier" size="3"><b>22 August 2013
-        - Three New Human Variation Tracks Released:</b></font> We are
-        pleased to announce the release of three tracks that describe human
-        genetic variation.
-        <a href="goldenPath/newsarch.html#082213">Read more</a>.
-        </p>
-
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