31ddc83c4a076344b767b4551de3594851afc14c
brianlee
Fri Oct 11 16:12:15 2013 -0700
Adding news release item about DGV update track refs #11200
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<!-- News Section ============================================- -->
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<font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD>
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<P>
To receive announcements of new genome
assembly releases, new software features, updates and
training seminars by email, subscribe to the
<A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
TARGET=_blank>genome-announce</A> mailing list.</P>
<!-- start news -->
<p>
+ <font face="courier" size="3"><b>11 October 2013 -
+ Updated DGV Structural Variation Track</b></font>
+ <p>
+ The UCSC Genome Browser is pleased to announce an updated DGV Structural Variant
+ track to reflect the official launch of the new <a href="http://dgv.tcag.ca/dgv/app/home"
+ target="_blank">Database of Genomic Variants</a>. The new release includes a number of
+ updates and corrections and completes DGV's transition from their Beta version as
+ they retire their original site for the new and improved site. For more background on
+ DGV's changes, please see DGV's <a href="http://dgv.tcag.ca/dgv/app/news"
+ target="_blank">June 2013 newsletter</a>.
+ </p>
+
+ <p>
<font face="courier" size="3"><b>26 September 2013 -
New American Alligator (allMis1) Assembly Now Available in the Genome Browser</b></font>
<p>
A Genome Browser is now available for the American alligator
(<em>Alligator mississippiensis</em>) assembly released
August 2012 by the International Crocodilian Genomes Working Group
(version allMis0.2, UCSC version allMis1).
Please note the <a href="http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKHW01"
target="_blank">assembly construction details</a>.
For more information and statistics about this assembly,
see the NCBI assembly record for
<a href="http://www.ncbi.nlm.nih.gov/assembly/406428/"
target="_blank">allMis0.2</a>. There are 14,645 scaffolds
with a total size of 2,174,259,888 bases.
<p>
Bulk downloads of the sequence and annotation data may be obtained from the Genome
Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/allMis1/">FTP server</a>
or the
<a href="http://hgdownload.cse.ucsc.edu/downloads.html#american_alligator">Downloads</a>
page. Please observe the
<a href="goldenpath/credits.html#american_alligator_use">conditions for use</a>
when accessing and using these data sets. The annotation tracks for this browser
were generated by UCSC and collaborators worldwide. See the
<a href="goldenpath/credits.html#american_alligator_credits">Credits</a> page for a detailed
list of the organizations and individuals who contributed to this release.
</p>
- <font face="courier" size="3"><b>11 September 2013 -
- New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font>
- <p>
- We are pleased to announce the release of a Genome Browser for the March 2013
- assembly of alpaca, <em>Vicugna pacos</em> (Broad Vicugna_pacos-2.0.1, UCSC version
- vicPac2). The whole genome shotgun assembly was provided by
- <a href="http://www.broadinstitute.org/"
- target="_blank">The Broad Institute</a>.
- There are 276,725 scaffolds with a total size of 2,172,191,320 bases.
- </p>
+
+ <!-- staged for archive use
<p>
- Bulk downloads of the sequence and annotation data are available via the Genome
- Browser
- <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/vicPac2/">FTP server</a>
- or the
- <a href="http://hgdownload.cse.ucsc.edu/downloads.html#alpaca">Downloads</a>
- page. These data have
- <a href="/goldenPath/credits.html#alpaca_credits">specific conditions for use</a>.
- The alpaca (vicPac2) browser annotation tracks were generated by UCSC and
- collaborators worldwide. See the
- <a href="/goldenPath/credits.html#alpaca_credits">Credits</a> page for a detailed
- list of the organizations and individuals who contributed to this release.
+ <font face="courier" size="3"><b>11 October 2013 -
+ Updated DGV Structural Variation Track</b></font>
+ <a href="goldenPath/newsarch.html#101113">Read more</a>.
</p>
- <!-- staged for archive use
<p>
<font face="courier" size="3"><b>26 September 2013 -
New American Alligator (allMis1) Assembly Now Available in the Genome Browser</b></font>
<a href="goldenPath/newsarch.html#092613">Read more</a>.
</p>
+ -->
+
+
+ <!-- start archives -->
+ <hr>
<p>
<font face="courier" size="3"><b>11 September 2013 -
New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font>
<a href="goldenPath/newsarch.html#091113">Read more</a>.
</p>
- -->
-
- <!-- start archives -->
- <hr>
- <p>
<p>
<font face="courier" size="3"><b>04 September 2013 -
New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font>
<a href="goldenPath/newsarch.html#090413">Read more</a>.
</p>
<font face="courier" size="3"><b>04 September 2013 -
New Sheep (oviAri3) Assembly Now Available in the Genome Browser </b></font>
<a href="goldenPath/newsarch.html#090413">Read more</a>.
</p>
- <p>
- <font face="courier" size="3"><b>22 August 2013
- - Three New Human Variation Tracks Released:</b></font> We are
- pleased to announce the release of three tracks that describe human
- genetic variation.
- <a href="goldenPath/newsarch.html#082213">Read more</a>.
- </p>
-
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