717efe68a39af2505ce0d8bce88b1d82e3b72a24
brianlee
Fri Oct 11 16:22:13 2013 -0700
Making Variant into Variation per Angies feedback refs #11200
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<font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD>
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<P>
To receive announcements of new genome
assembly releases, new software features, updates and
training seminars by email, subscribe to the
<A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
TARGET=_blank>genome-announce</A> mailing list.</P>
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<font face="courier" size="3"><b>11 October 2013 -
Updated DGV Structural Variation Track</b></font>
<p>
- The UCSC Genome Browser is pleased to announce an updated DGV Structural Variant
+ The UCSC Genome Browser is pleased to announce an updated DGV Structural Variation
track to reflect the official launch of the new <a href="http://dgv.tcag.ca/dgv/app/home"
target="_blank">Database of Genomic Variants</a>. The new release includes a number of
updates and corrections and completes DGV's transition from their Beta version as
they retire their original site for the new and improved site. For more background on
DGV's changes, please see DGV's <a href="http://dgv.tcag.ca/dgv/app/news"
target="_blank">June 2013 newsletter</a>.
</p>
<p>
<font face="courier" size="3"><b>26 September 2013 -
New American Alligator (allMis1) Assembly Now Available in the Genome Browser</b></font>
<p>
A Genome Browser is now available for the American alligator
(<em>Alligator mississippiensis</em>) assembly released
August 2012 by the International Crocodilian Genomes Working Group
(version allMis0.2, UCSC version allMis1).
Please note the <a href="http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKHW01"
target="_blank">assembly construction details</a>.
For more information and statistics about this assembly,
see the NCBI assembly record for
<a href="http://www.ncbi.nlm.nih.gov/assembly/406428/"
target="_blank">allMis0.2</a>. There are 14,645 scaffolds
with a total size of 2,174,259,888 bases.
<p>
Bulk downloads of the sequence and annotation data may be obtained from the Genome
Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/allMis1/">FTP server</a>
or the
<a href="http://hgdownload.cse.ucsc.edu/downloads.html#american_alligator">Downloads</a>
page. Please observe the
<a href="goldenpath/credits.html#american_alligator_use">conditions for use</a>
when accessing and using these data sets. The annotation tracks for this browser
were generated by UCSC and collaborators worldwide. See the
<a href="goldenpath/credits.html#american_alligator_credits">Credits</a> page for a detailed
list of the organizations and individuals who contributed to this release.
</p>
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<p>
<font face="courier" size="3"><b>11 October 2013 -
Updated DGV Structural Variation Track</b></font>
<a href="goldenPath/newsarch.html#101113">Read more</a>.
</p>
<p>
<font face="courier" size="3"><b>26 September 2013 -
New American Alligator (allMis1) Assembly Now Available in the Genome Browser</b></font>
<a href="goldenPath/newsarch.html#092613">Read more</a>.
</p>
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<p>
<font face="courier" size="3"><b>11 September 2013 -
New Alpaca (vicPac2) Assembly Now Available in the Genome Browser</b></font>
<a href="goldenPath/newsarch.html#091113">Read more</a>.
</p>
<p>
<font face="courier" size="3"><b>04 September 2013 -
New Tenrec (echTel2) Assembly Now Available in the Genome Browser</b></font>
<a href="goldenPath/newsarch.html#090413">Read more</a>.
</p>
<font face="courier" size="3"><b>04 September 2013 -
New Sheep (oviAri3) Assembly Now Available in the Genome Browser </b></font>
<a href="goldenPath/newsarch.html#090413">Read more</a>.
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