Commits for galt

v292_preview2 to v292_base (2013-11-04 to 2013-11-11) v292

• adding IUPAC support to the oligoMatch utility (which was cloned from hgTracks originally and then forgotten)
  • src/hg/hgTracks/hgTracks.c - lines changed 6, context: html, text, full: html, text
  • src/hg/utils/oligoMatch/oligoMatch.c - lines changed 29, context: html, text, full: html, text
  • src/hg/utils/oligoMatch/tests/expected/basicTest.bed - lines changed 16, context: html, text, full: html, text
  • src/hg/utils/oligoMatch/tests/input/oligos.fa - lines changed 6, context: html, text, full: html, text
  • src/hg/utils/oligoMatch/tests/input/sequence.fa - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/oligoMatch/tests/makefile - lines changed 17, context: html, text, full: html, text
• adding phastBias to tablesIgnored
  • src/hg/makeDb/schema/all.joiner - lines changed 9, context: html, text, full: html, text
• fixes #12107. This fixes the hgTables gtf-output frame column, at least for tables that have exonFrames column available like non-ancient refGene and other genePredExt tables usually do.
  • src/hg/hgTables/gffOut.c - lines changed 72, context: html, text, full: html, text
• fixes #11651. Accidentally failover was looking for backupcentral.database instead of backupcentral.db which is what all of our configurations have been using. Wow! Busted since 2009.
  • src/hg/lib/hdb.c - lines changed 1, context: html, text, full: html, text
• oops must allow "10" which is 2 digits long
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 6, context: html, text, full: html, text