Commits for hiram
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v292_preview2 to v292_base (2013-11-04 to 2013-11-11) v292
- add blank line between stanzas to fix brokeness
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
- compare chrom names case dependent refs #11907
- src/hg/genePredCheck/genePredCheck.c - lines changed 8, context: html, text, full: html, text
- correct chrom names case translation refs #11907
- src/hg/utils/automation/ensGene/gorGor3.ensGene.ra - lines changed 1, context: html, text, full: html, text
- update to current copies refs #11675
- src/hg/utils/automation/ensGene/cioSav2.ensGene.ra - lines changed 1, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/echTel1.ensGene.ra - lines changed 2, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/eriEur1.ensGene.ra - lines changed 2, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/gadMor1.ensGene.ra - lines changed 3, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/ochPri2.ensGene.ra - lines changed 2, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/petMar2.ensGene.ra - lines changed 1, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/proCap1.ensGene.ra - lines changed 4, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/tarSyr1.ensGene.ra - lines changed 2, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/tupBel1.ensGene.ra - lines changed 2, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/turTru1.ensGene.ra - lines changed 2, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/vicPac1.ensGene.ra - lines changed 2, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/xenTro3.ensGene.ra - lines changed 2, context: html, text, full: html, text
- up to date with new files refs #11675
- src/hg/utils/automation/ensGene/anaPla1.ensGene.ra - lines changed 5, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/ficAlb1.ensGene.ra - lines changed 5, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/galGal4.ensGene.ra - lines changed 7, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/musFur1.ensGene.ra - lines changed 5, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/pelSin1.ensGene.ra - lines changed 5, context: html, text, full: html, text
- src/hg/utils/automation/ensGene/xipMac1.ensGene.ra - lines changed 6, context: html, text, full: html, text
- running up refGene and knownCanonical alignments files for 100-way refs #11808
- src/hg/makeDb/doc/hg19.txt - lines changed 106, context: html, text, full: html, text
- correct path names to libcrypto and libssl refs #12005
- trying different order for crypto ssl mysql static libs refs @12005
- need duplicate entries for ssl and crypto static libs refs #12005
- can use static libstdc++.a and librt.a when on hgwdev refs #12005
- cleaning up keys in the oreganno track to clean up joiner checks
- src/hg/makeDb/doc/hg19.txt - lines changed 114, context: html, text, full: html, text
- done with refGene and knownCanonical alignment files for 100-way refs #11808
- src/hg/makeDb/doc/hg19.txt - lines changed 41, context: html, text, full: html, text
- new 5.0 gcc compiler on mac OSX will not accept bare inline functions must be static inline instead refs #12106
- new 5.0 gcc compiler on mac OSX has the word restrict as a reserved word can not use as a variable refs #12106
- src/utils/bigWigCorrelate/bigWigCorrelate.c - lines changed 4, context: html, text, full: html, text
- new 5.0 gcc compiler on mac OSX identifies non-void function not returning a value refs #12106
- src/hg/orthoMap/orthoEvaluate.c - lines changed 1, context: html, text, full: html, text
- do not build refreshNamedSessionCustomTracks on Mac OSX will not work refs #12106
- update makefile to userApps specifications refs #12106
- src/hg/utils/mysqlSecurityCheck/makefile - lines changed 14, context: html, text, full: html, text
- eliminate useless -L/lib directive on Mac OSX refs #12106
- running up Ostrich and Falcon lastz to Turkey refs #10272
- src/hg/makeDb/doc/melGal1.txt - lines changed 125, context: html, text, full: html, text
- finish off falPer1 melGal1 strCam0 galGal4 lastz runs refs #10272
- src/hg/makeDb/doc/falPer1.txt - lines changed 70, context: html, text, full: html, text
- src/hg/makeDb/doc/galGal4.txt - lines changed 180, context: html, text, full: html, text
- src/hg/makeDb/doc/melGal1.txt - lines changed 7, context: html, text, full: html, text
- v292 final build
- src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
- New version number v292
- src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
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