b5db9c06677afc3bd3a237ff3e3c171149d08725 donnak Wed Oct 23 12:58:50 2013 -0700 Incorporated code review feedback. #11972 diff --git src/hg/pslPretty/pslPretty.c src/hg/pslPretty/pslPretty.c index 076c551..79fc63f 100644 --- src/hg/pslPretty/pslPretty.c +++ src/hg/pslPretty/pslPretty.c @@ -15,31 +15,31 @@ void usage() /* Explain usage and exit. */ { errAbort( "pslPretty - Convert PSL to human-readable output\n" "usage:\n" " pslPretty in.psl target.lst query.lst pretty.out\n" "options:\n" " -axt Save in format like Scott Schwartz's axt format.\n" " Note gaps in both sequences are still allowed in the\n" " output, which not all axt readers will expect.\n" " -dot=N Output a dot every N records.\n" " -long Don't abbreviate long inserts.\n" " -check=fileName Output alignment checks to filename.\n" "It's recommended that the psl file be sorted by target if it contains\n" - "multiple targets; otherwise this will be extremely slow. The target and query\n" + "multiple targets; otherwise, this will be extremely slow. The target and query\n" "lists can be fasta, 2bit or nib files, or a list of these files, one per line.\n"); } int dot = 0; boolean doShort = FALSE; struct axtScoreScheme *ss = NULL; struct seqFilePos /* Where a sequence is in a file. */ { struct filePos *next; /* Next in list. */ char *name; /* Sequence name. Allocated in hash. */ char *file; /* Sequence file name, allocated in hash. */ long pos; /* Position in fa file/size of nib. */ bool isNib; /* True if a nib file. */