To receive announcements of new genome
assembly releases, new software features, updates and
training seminars by email, subscribe to the
genome-announce mailing list.
23 October 2013 -
- dbSNP 138 Available for hg19
+ Job Opening: UCSC Genome Browser Trainer
- We are pleased to announce the release of four tracks derived from dbSNP build 138,
- available on the human assembly (GRCh37/hg19). dbSNP build 138 is available at NCBI.
+ The Center for Biomolecular Science
+ and Engineering (CBSE) at University of California Santa Cruz
+ seeks an articulate, self-motivated educator for the two-year position of UCSC Genome
+ Browser trainer. The trainer develops curriculum and provides in-person training on the UCSC
+ Genome Browser at universities, hospitals, institutes, and professional
+ meetings in the United States and internationally. Typical audiences include graduate
+ and post-graduate biologists and doctors, with Genome Browser experience ranging from novice
+ users to bioinformatics specialists. Presentations include formal talks, problem-solving
+ sessions, and two-day workshops.
+
+ This position requires a Master's degree in a biological science, depth in molecular
+ biology, experience in a research environment, working knowledge of the UCSC Genome Browser,
+ understanding of its role in research methodology, and experience teaching or training in a
+ scientific environment. Preferred qualifications include a PhD in a relevant field,
+ experience with video production, and experience with HTML or web content management
+ systems.
+
+ For more information and to apply for this position, see
+ Job #1304619 on the UCSC Staff Employment website.
+
+
+
+
+ 23 October 2013 -
+ dbSNP Build 138 Available for hg19
+
+ We are pleased to announce the release of four tracks derived from NCBI
+ dbSNP Build 138
+ data, available on the human assembly (GRCh37/hg19).
The new tracks contain additional annotation data not included in previous dbSNP
tracks, with corresponding coloring and filtering options in the Genome Browser.
- As for dbSNP build 138, there are four tracks in this release. One is a track
+ As was the case for the annotations based on the previous dbSNP build 137, there are
+ four tracks in this release. One is a track
containing all mappings of reference SNPs to the human assembly, labeled
"All SNPs (138)". The other three tracks are subsets of this track and show
interesting and easily defined subsets of dbSNP:
- Common SNPs (138): uniquely mapped variants that appear in at least 1%
of the population or are 100% non-reference
- Flagged SNPs (138): uniquely mapped variants, excluding Common SNPs,
that have been flagged by dbSNP as "clinically associated"
- Mult. SNPs (138): variants that have been mapped to more than one genomic location
By default, only the Common SNPs (138) are visible; other tracks must be
made visible using the track controls.
You will find the four SNPs (138) tracks on the Human Feb. 2009 (GRCh37/hg19)
browser in the "Variation and Repeats" group.
- The tracks were produced at UCSC by Angie Hinrichs and Luvina Guruvadoo.
+ The tracks were produced at UCSC by Angie Hinrichs and Luvina Guruvadoo. We'd like
+ to thank the dbSNP group at NCBI for providing access to these data.
+
+
+
11 October 2013 -
- Updated DGV Structural Variation Track
+ Updated DGV Structural Variation Track:
+ The UCSC Genome Browser team is pleased to announce an updated DGV Structural Variation
+ track to reflect the official launch of the new Database of Genomic Variants.
Read more.
- -->
-
-
-
-
-
26 September 2013 -
- New American Alligator (allMis1) Assembly Now Available in the Genome Browser
+ New American Alligator (allMis1) Assembly Now Available in the Genome
+ Browser:
+ A Genome Browser is now available for the American alligator
+ (Alligator mississippiensis) assembly released
+ August 2012 by the International Crocodilian Genomes Working Group
+ (version allMis0.2, UCSC version allMis1).
Read more.
-
- 11 September 2013 -
- New Alpaca (vicPac2) Assembly Now Available in the Genome Browser
- Read more.
-
-
-
- 04 September 2013 -
- New Tenrec (echTel2) Assembly Now Available in the Genome Browser
- Read more.
-
-
|