5f58b8c336cffcaa1a7792363bbafa82a7d02e9e
max
  Thu Oct 24 15:58:50 2013 -0700
fix typo in help message
diff --git src/utils/mapViewerToGenePred/mapViewerToGenePred src/utils/mapViewerToGenePred/mapViewerToGenePred
index 6bcb281..193cbaa 100755
--- src/utils/mapViewerToGenePred/mapViewerToGenePred
+++ src/utils/mapViewerToGenePred/mapViewerToGenePred
@@ -1,30 +1,30 @@
 #!/usr/bin/env python
 # written by Max Haeussler, Aug 2013
 # converts ncbi mapviewer .md files to gene pred
 import sys, gzip, operator, logging, optparse
 from collections import defaultdict
 
 # === COMMAND LINE INTERFACE, OPTIONS AND HELP ===
 parser = optparse.OptionParser("""usage: %prog [options] inFileGzOK outFileStdOutOk - converts NCBI mapviewer files to UCSC genePred format
 
 NCBI provides mapviewer files at ftp://ftp.ncbi.nih.gov/genomes/MapView/
 An example for Homo sapiens is seq_gene.md.gz
 """)
 
 parser.add_option("-d", "--debug", dest="debug", action="store_true", help="show debug messages") 
-parser.add_option("-a", "--assembly", dest="assembly", action="store", help="The assemly to use, default %default", default="Primary_Assembly") 
+parser.add_option("-a", "--assembly", dest="assembly", action="store", help="The assembly to use, default %default", default="Primary_Assembly") 
 #parser.add_option("", "--test", dest="test", action="store_true", help="do something") 
 (options, args) = parser.parse_args()
 
 if options.debug:
     logging.basicConfig(level=logging.DEBUG)
 else:
     logging.basicConfig(level=logging.INFO)
 
 if args==[]:
     parser.print_help()
     exit(1)
 
 # ============== FUNCTIONS =================
 def main(args, options):
     inFname, outFname = args