Commits for angie
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v293_preview2 to v293_base (2013-12-02 to 2013-12-09) v293
- Fixing a dependency that broke parallel make (thanks Jonathan for finding!) and using ${MAKE} instead of make so that parallel make won't warn about 'jobserver unavailable'.
- src/hg/encode3/encodeDataWarehouse/makefile - lines changed 3, context: html, text, full: html, text
- In annoGratorQueryExecute, if we're searching a specific region andthe primary source's first item comes from some later chromosome,
that simply means that the primary source has no items on the
specified chrom. So instead of passing it to the grators, just
quit. Also when searching a specific region, if there are no rows
from the primary source, add a comment to the output(s).
fixes #12278
- src/lib/annoGratorQuery.c - lines changed 21, context: html, text, full: html, text
- Added a couple ENCODE Regulation summary tracks to hgVai. refs #11461
- Finally added hgTrackUi links for tracks offered by hgVai. Thanks for the prod, Jonathan! refs #11461
- Adding a missing dependency (cgi depends on edwLib) in hopes that it prevents sporadic errors from ld reading nonsense.
- src/hg/encode3/encodeDataWarehouse/makefile - lines changed 1, context: html, text, full: html, text
- Revert "Added a couple ENCODE Regulation summary tracks to hgVai. refs #11461"This reverts commit c65b04d176ad125c1eddd777fb8befd481bdba2c.
I decided that hgVai's support for regulatory tracks is not sufficient to roll
out to the RR because annoFormatVep isn't yet smart enough to add regulatory
consequence SO term (regulatory_region_variant) when one or more of these overlap.
Also, there really should be some filtering - I suspect the false positive rate
will be too high otherwise because the Tfbs cover 1/8th of the genome. The next
release to the RR is not until Jan. 21, more than a month from now. I'll bring
this back after the v293 build is tagged.
refs #11461
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