File Changes for braney

v293_preview2 to v293_base (2013-12-02 to 2013-12-09) v293

• src/hg/genePredToMafFrames/orgGenes.c
  • lines changed 1, context: html, text, full: html, text
    remove erroneous subtraction of 1 from end coordinate. Fixs problemwith maf blocks of size 1 not being annotated.
    
• src/hg/lib/trackHub.c
  • lines changed 4, context: html, text, full: html, text
    don't crash if given file names with ':' in them. Fixes #12267
• src/hg/makeDb/doc/go.txt
  • lines changed 10, context: html, text, full: html, text
    update GO database
• src/hg/makeDb/genbank/src/dbload/gbDbLoadStep
  • lines changed 8, context: html, text, full: html, text
    don't create lock files when using initialLoad to load a database. Thedatabase will still me locked. #10357
    
• src/hg/pslCDnaFilter/tests/expected/repsAsMatchTest/filt.out
  • lines changed 5, context: html, text, full: html, text
    add a test for repsAsMatch pslCDnaFilter flag
• src/hg/pslCDnaFilter/tests/expected/repsAsMatchTest/keep.psl
  • lines changed 11, context: html, text, full: html, text
    add a test for repsAsMatch pslCDnaFilter flag
• src/hg/pslCDnaFilter/tests/makefile
  • lines changed 4, context: html, text, full: html, text
    add a test for repsAsMatch pslCDnaFilter flag
• src/hg/utils/otto/decipher/checkDecipher.sh
  • lines changed 62, context: html, text, full: html, text
    make changes to the login procedures because decipher changed them.
• src/hg/utils/otto/decipher/login.perl
  • lines changed 14, context: html, text, full: html, text
    make changes to the login procedures because decipher changed them.
• src/hg/utils/otto/decipher/validateDecipher.sh
  • lines changed 8, context: html, text, full: html, text
    make changes to the login procedures because decipher changed them.