3ad84c2459f95896305b0a3bc0a587ce928dd94f angie Wed Nov 27 12:51:53 2013 -0800 Updating reference for dbNSFP. diff --git src/hg/hgVai/hgVai.c src/hg/hgVai/hgVai.c index a5d0a1c..566d9b4 100644 --- src/hg/hgVai/hgVai.c +++ src/hg/hgVai/hgVai.c @@ -480,32 +480,32 @@ boolean defaultChecked = (sameString("dbNsfpSift", table) || sameString("dbNsfpPolyPhen2", table)); cartMakeCheckBox(cart, cartVar, defaultChecked); printf("%s
\n", description); } } void selectDbNsfp(struct slName *dbNsfpTables) /* Let user select scores/predicitions from various tools collected by dbNSFP. */ { if (dbNsfpTables == NULL) return; startCollapsibleSection("dbNsfp", "Database of Non-synonymous Functional Predictions (dbNSFP)", TRUE); printf("dbNSFP " - "(Liu et al. 2011) " + "(Liu et al. 2013) " "release 2.0 " "provides pre-computed scores and predictions of functional significance " "from a variety of tools. Every possible coding change to transcripts in " //#*** hardcoded version info... sigh, we need trackDb... or metaDb?? "Gencode release 9 (Ensembl 64, Dec. 2011) gene predictions " "has been evaluated. " "Note: This may not encompass all transcripts in your " "selected gene set.
\n"); //#*** Another cheap hack: reverse alph order happens to be what we want, //#*** but priorities would be cleaner: slReverse(&dbNsfpTables); struct slName *table; for (table = dbNsfpTables; table != NULL; table = table->next) { if (sameString(table->name, "dbNsfpPolyPhen2"))