3ad84c2459f95896305b0a3bc0a587ce928dd94f
angie
Wed Nov 27 12:51:53 2013 -0800
Updating reference for dbNSFP.
diff --git src/hg/hgVai/hgVai.c src/hg/hgVai/hgVai.c
index a5d0a1c..566d9b4 100644
--- src/hg/hgVai/hgVai.c
+++ src/hg/hgVai/hgVai.c
@@ -480,32 +480,32 @@
boolean defaultChecked = (sameString("dbNsfpSift", table) ||
sameString("dbNsfpPolyPhen2", table));
cartMakeCheckBox(cart, cartVar, defaultChecked);
printf("%s
\n", description);
}
}
void selectDbNsfp(struct slName *dbNsfpTables)
/* Let user select scores/predicitions from various tools collected by dbNSFP. */
{
if (dbNsfpTables == NULL)
return;
startCollapsibleSection("dbNsfp", "Database of Non-synonymous Functional Predictions (dbNSFP)",
TRUE);
printf("dbNSFP "
- "(Liu et al. 2011) "
+ "(Liu et al. 2013) "
"release 2.0 "
"provides pre-computed scores and predictions of functional significance "
"from a variety of tools. Every possible coding change to transcripts in "
//#*** hardcoded version info... sigh, we need trackDb... or metaDb??
"Gencode release 9 (Ensembl 64, Dec. 2011) gene predictions "
"has been evaluated. "
"Note: This may not encompass all transcripts in your "
"selected gene set.
\n");
//#*** Another cheap hack: reverse alph order happens to be what we want,
//#*** but priorities would be cleaner:
slReverse(&dbNsfpTables);
struct slName *table;
for (table = dbNsfpTables; table != NULL; table = table->next)
{
if (sameString(table->name, "dbNsfpPolyPhen2"))