e0b42e8fc403d0153c16a5762086543eddd80763
pauline
  Wed Nov 27 15:39:15 2013 -0800
Adding entry for 100way. refs #11808
diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html
index 8cdc943..f5c4e32 100755
--- src/hg/htdocs/indexNews.html
+++ src/hg/htdocs/indexNews.html
@@ -1,140 +1,122 @@
 <!-- News Section ============================================- -->  
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                  <font size="4"><a name="TOC"></a><b>&nbsp; News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD>
                 <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG 
                 SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A>
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           <P>
           To receive announcements of new genome 
           assembly releases, new software features, updates and 
           training seminars by email, subscribe to the
           <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
           TARGET=_blank>genome-announce</A> mailing list.</P>
 
     <!-- start news -->
         <p>
+        <font face="courier" size="3"><b>27 November 2013 -
+        100 Species Conservation Track now available on hg19</b></font>
+        </p>
+        <p>
+        After 15.4 years of CPU run-time in 9,905,594 individual 'jobs' and 99 cluster runs for lastz 
+        pair-wise alignment...we are excited to announce the release of a 100 species alignment on the 
+        hg19/GRCh37 human Genome Browser.
+        </p>
+        <p>
+        This new Conservation track shows multiple alignments of 100 species and measurements of 
+        evolutionary conservation using two methods (phastCons and phyloP) from the PHAST package. 
+        This adds 40 more species to the existing 60way on the mm10 mouse browser. For more information 
+        about the 100 species Conservation track, see its description page.
+        </p>
+        <p>
+        We'd also like to acknowledge the hard work of the UCSC Genome Browser staff who pulled together 
+        the information for this track: Hiram Clawson and Pauline Fujita.
+        </p>
+        <hr>
+
+	<p>
         <font face="courier" size="3"><b>24 October 2013 -
         Job Opening: UCSC Genome Browser Trainer</b></font>
         <p>
 	The <a href="http://cbse.ucsc.edu/" target="_blank">Center for Biomolecular Science
 	and Engineering</a> (CBSE) at University of California Santa Cruz
 	seeks an articulate, self-motivated educator for the two-year position of UCSC Genome
 	Browser trainer. The trainer develops curriculum and provides in-person training on the UCSC
 	Genome Browser at universities, hospitals, institutes, and professional
 	meetings in the United States and internationally. Typical audiences include graduate 
 	and post-graduate biologists and doctors, with Genome Browser experience ranging from novice
 	users to bioinformatics specialists. Presentations include formal talks, problem-solving 
 	sessions, and two-day workshops. </p>
  	<p>
 	This position requires a Master's degree in a biological science, depth in molecular
 	biology, experience in a research environment, working knowledge of the UCSC Genome Browser,
 	understanding of its role in research methodology, and experience teaching or training in a
 	scientific environment. Preferred qualifications include a PhD in a relevant field,
 	experience with video production, and experience with HTML or web content management
 	systems. </p>
 	<p>
 	For more information and to apply for this position, see
 	<a href="http://bit.ly/browserJob" target="_blank">Job #1304619</a> on the UCSC Staff 
 	Employment website.  </p>
 	
-	<hr>
-
-	<p>
-        <font face="courier" size="3"><b>23 October 2013 -
-        dbSNP Build 138 Available for hg19</b></font>
-        <p>
-	We are pleased to announce the release of four tracks derived from NCBI
- 	<a href="http://www.ncbi.nlm.nih.gov/SNP/" target="_blank">dbSNP</a> Build 138
- 	data, available on the human assembly (GRCh37/hg19). 
-	The new tracks contain additional annotation data not included in previous dbSNP 
-	tracks, with corresponding coloring and filtering options in the Genome Browser.
-	</p>
-	<p>
-	As was the case for the annotations based on the previous dbSNP build 137, there are 
-	four tracks in this release.  One is a track 
-	containing all mappings of reference SNPs to the human assembly, labeled 
-	"All SNPs (138)". The other three tracks are subsets of this track and show 
-	interesting and easily defined subsets of dbSNP:
-	</p>
-	<ul>
-	<li>Common SNPs (138): uniquely mapped variants that appear in at least 1% 
-	of the population or are 100% non-reference
-	<li>Flagged SNPs (138): uniquely mapped variants, excluding Common SNPs, 
-	that have been flagged by dbSNP as "clinically associated"
-	<li>Mult. SNPs (138): variants that have been mapped to more than one genomic location
-	</ul>
-	<p>
-	By default, only the Common SNPs (138) are visible; other tracks must be 
-	made visible using the track controls.
-	</p>
+        <!-- staged for archive use
         <p>
-	You will find the four SNPs (138) tracks on the Human Feb. 2009 (GRCh37/hg19) 
-	browser in the "Variation and Repeats" group.
+        <font face="courier" size="3"><b>27 November 2013 -
+        100 Species Conservation Track now available on hg19</b></font>
         </p>
+       
         <p>
-	The tracks were produced at UCSC by Angie Hinrichs and Luvina Guruvadoo. We'd like
-	to thank the dbSNP group at NCBI for providing access to these data.
+        We're happy to announce the release of a new track on the hg19/GRCh37 human Genome Browser. 
+        The new Conservation track shows multiple alignments of 100 species and measurements of 
+        evolutionary conservation using two methods (phastCons and phyloP) from the PHAST package. 
         </p> 
 
-        <!-- staged for archive use
 	<p>
         <font face="courier" size="3"><b>24 October 2013 -
         Job Opening: UCSC Genome Browser Trainer</b></font>
         <p>
 	The <a href="http://cbse.ucsc.edu/" target="_blank">Center for Biomolecular Science
 	and Engineering</a> (CBSE) at University of California Santa Cruz
 	seeks an articulate, self-motivated educator for the two-year position of UCSC Genome
 	Browser trainer. 
         <a href="goldenPath/newsarch.html#102413">Read more</a>.
         </p>
+        -->
+
+        <!-- start archives -->
+        <hr>
  
         <p>
         <font face="courier" size="3"><b>23 October 2013 -
         dbSNP 138 Available for hg19: </b></font>
 	We are pleased to announce the release of four tracks derived from NCBI
  	<a href="http://www.ncbi.nlm.nih.gov/SNP/" target="_blank">dbSNP</a> Build 138
  	data, available on the human assembly (GRCh37/hg19). 
         <a href="goldenPath/newsarch.html#102313">Read more</a>.
         </p>
 
-        -->
-
-        <!-- start archives -->
-	<hr>
 	<p>
         <font face="courier" size="3"><b>11 October 2013 -
         Updated DGV Structural Variation Track: </b></font>
         The UCSC Genome Browser team is pleased to announce an updated DGV Structural Variation
         track to reflect the official launch of the new <a href="http://dgv.tcag.ca/dgv/app/home"
         target="_blank">Database of Genomic Variants</a>.
         <a href="goldenPath/newsarch.html#101113">Read more</a>.
         </p>
         
-	<p>
-        <font face="courier" size="3"><b>26 September 2013 -
-        New American Alligator (allMis1) Assembly Now Available in the Genome
-        Browser: </b></font>
-        A Genome Browser is now available for the American alligator
-        (<em>Alligator mississippiensis</em>) assembly released
-        August 2012 by the International Crocodilian Genomes Working Group
-        (version allMis0.2, UCSC version allMis1).
-        <a href="goldenPath/newsarch.html#092613">Read more</a>.
-        </p>
-
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