e0b42e8fc403d0153c16a5762086543eddd80763 pauline Wed Nov 27 15:39:15 2013 -0800 Adding entry for 100way. refs #11808 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 8cdc943..f5c4e32 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,140 +1,122 @@ <!-- News Section ============================================- --> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <p> + <font face="courier" size="3"><b>27 November 2013 - + 100 Species Conservation Track now available on hg19</b></font> + </p> + <p> + After 15.4 years of CPU run-time in 9,905,594 individual 'jobs' and 99 cluster runs for lastz + pair-wise alignment...we are excited to announce the release of a 100 species alignment on the + hg19/GRCh37 human Genome Browser. + </p> + <p> + This new Conservation track shows multiple alignments of 100 species and measurements of + evolutionary conservation using two methods (phastCons and phyloP) from the PHAST package. + This adds 40 more species to the existing 60way on the mm10 mouse browser. For more information + about the 100 species Conservation track, see its description page. + </p> + <p> + We'd also like to acknowledge the hard work of the UCSC Genome Browser staff who pulled together + the information for this track: Hiram Clawson and Pauline Fujita. + </p> + <hr> + + <p> <font face="courier" size="3"><b>24 October 2013 - Job Opening: UCSC Genome Browser Trainer</b></font> <p> The <a href="http://cbse.ucsc.edu/" target="_blank">Center for Biomolecular Science and Engineering</a> (CBSE) at University of California Santa Cruz seeks an articulate, self-motivated educator for the two-year position of UCSC Genome Browser trainer. The trainer develops curriculum and provides in-person training on the UCSC Genome Browser at universities, hospitals, institutes, and professional meetings in the United States and internationally. Typical audiences include graduate and post-graduate biologists and doctors, with Genome Browser experience ranging from novice users to bioinformatics specialists. Presentations include formal talks, problem-solving sessions, and two-day workshops. </p> <p> This position requires a Master's degree in a biological science, depth in molecular biology, experience in a research environment, working knowledge of the UCSC Genome Browser, understanding of its role in research methodology, and experience teaching or training in a scientific environment. Preferred qualifications include a PhD in a relevant field, experience with video production, and experience with HTML or web content management systems. </p> <p> For more information and to apply for this position, see <a href="http://bit.ly/browserJob" target="_blank">Job #1304619</a> on the UCSC Staff Employment website. </p> - <hr> - - <p> - <font face="courier" size="3"><b>23 October 2013 - - dbSNP Build 138 Available for hg19</b></font> - <p> - We are pleased to announce the release of four tracks derived from NCBI - <a href="http://www.ncbi.nlm.nih.gov/SNP/" target="_blank">dbSNP</a> Build 138 - data, available on the human assembly (GRCh37/hg19). - The new tracks contain additional annotation data not included in previous dbSNP - tracks, with corresponding coloring and filtering options in the Genome Browser. - </p> - <p> - As was the case for the annotations based on the previous dbSNP build 137, there are - four tracks in this release. One is a track - containing all mappings of reference SNPs to the human assembly, labeled - "All SNPs (138)". The other three tracks are subsets of this track and show - interesting and easily defined subsets of dbSNP: - </p> - <ul> - <li>Common SNPs (138): uniquely mapped variants that appear in at least 1% - of the population or are 100% non-reference - <li>Flagged SNPs (138): uniquely mapped variants, excluding Common SNPs, - that have been flagged by dbSNP as "clinically associated" - <li>Mult. SNPs (138): variants that have been mapped to more than one genomic location - </ul> - <p> - By default, only the Common SNPs (138) are visible; other tracks must be - made visible using the track controls. - </p> + <!-- staged for archive use <p> - You will find the four SNPs (138) tracks on the Human Feb. 2009 (GRCh37/hg19) - browser in the "Variation and Repeats" group. + <font face="courier" size="3"><b>27 November 2013 - + 100 Species Conservation Track now available on hg19</b></font> </p> + <p> - The tracks were produced at UCSC by Angie Hinrichs and Luvina Guruvadoo. We'd like - to thank the dbSNP group at NCBI for providing access to these data. + We're happy to announce the release of a new track on the hg19/GRCh37 human Genome Browser. + The new Conservation track shows multiple alignments of 100 species and measurements of + evolutionary conservation using two methods (phastCons and phyloP) from the PHAST package. </p> - <!-- staged for archive use <p> <font face="courier" size="3"><b>24 October 2013 - Job Opening: UCSC Genome Browser Trainer</b></font> <p> The <a href="http://cbse.ucsc.edu/" target="_blank">Center for Biomolecular Science and Engineering</a> (CBSE) at University of California Santa Cruz seeks an articulate, self-motivated educator for the two-year position of UCSC Genome Browser trainer. <a href="goldenPath/newsarch.html#102413">Read more</a>. </p> + --> + + <!-- start archives --> + <hr> <p> <font face="courier" size="3"><b>23 October 2013 - dbSNP 138 Available for hg19: </b></font> We are pleased to announce the release of four tracks derived from NCBI <a href="http://www.ncbi.nlm.nih.gov/SNP/" target="_blank">dbSNP</a> Build 138 data, available on the human assembly (GRCh37/hg19). <a href="goldenPath/newsarch.html#102313">Read more</a>. </p> - --> - - <!-- start archives --> - <hr> <p> <font face="courier" size="3"><b>11 October 2013 - Updated DGV Structural Variation Track: </b></font> The UCSC Genome Browser team is pleased to announce an updated DGV Structural Variation track to reflect the official launch of the new <a href="http://dgv.tcag.ca/dgv/app/home" target="_blank">Database of Genomic Variants</a>. <a href="goldenPath/newsarch.html#101113">Read more</a>. </p> - <p> - <font face="courier" size="3"><b>26 September 2013 - - New American Alligator (allMis1) Assembly Now Available in the Genome - Browser: </b></font> - A Genome Browser is now available for the American alligator - (<em>Alligator mississippiensis</em>) assembly released - August 2012 by the International Crocodilian Genomes Working Group - (version allMis0.2, UCSC version allMis1). - <a href="goldenPath/newsarch.html#092613">Read more</a>. - </p> - </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>