File Changes for angie

v293_base to v294_preview (2013-12-09 to 2013-12-16) v294

• src/hg/hgTracks/bamTrack.c
  • lines changed 1, context: html, text, full: html, text
    In MLQ #12327, user reported that BAM track colored by tag was turningblue as we zoomed out, even though most items are red. Unbeknownst to
    me, if a linkedFeatures track has non-NULL colorShades, items are sorted
    by their color, and in this case it favored blue over other colors.
    Only the gray-scale coloring modes need colorShades. So don't add colorShades
    unless the coloring mode is gray-scale. refs #12327
    
• src/hg/hgVai/hgVai.c
  • lines changed 1, context: html, text, full: html, text
    Thanks Jonathan for noticing I forgot to mention that by 'Variant Identifiers' we mean 'dbSNP rs# ids' for now... refs #11460
• src/hg/hgc/hgc.c
  • lines changed 8, context: html, text, full: html, text
    Fixing bad assumption that htcCdnaAli's aliTable is a track. It may be "all_mrna". Fixes #12322