e947f44bed3e61a500f59423d3c560eff9bcf270
galt
  Fri Dec 13 15:03:41 2013 -0800
Merging in bigWigCat shared branch with --squash. This is Daniel Zerbino's work.
diff --git src/inc/bwgInternal.h src/inc/bwgInternal.h
index feb1521..d32a475 100644
--- src/inc/bwgInternal.h
+++ src/inc/bwgInternal.h
@@ -99,20 +99,21 @@
 	char *fileName,       /* Name of ascii wig file. */
 	boolean clipDontDie,  /* Skip items outside chromosome rather than aborting. */
 	struct hash *chromSizeHash,  /* If non-NULL items checked to be inside chromosome. */
 	int maxSectionSize,   /* Biggest size of a section.  100 - 100,000 is usual range. */
 	struct lm *lm);	      /* Memory pool to allocate from. */
 /* Parse out ascii wig file - allocating memory in lm. */
 
 int bwgAverageResolution(struct bwgSection *sectionList);
 /* Return the average resolution seen in sectionList. */
 
 struct bbiSummary *bwgReduceSectionList(struct bwgSection *sectionList, 
 	struct bbiChromInfo *chromInfoArray, int reduction);
 /* Return summary of section list reduced by given amount. */
 
 void bwgCreate(struct bwgSection *sectionList, struct hash *chromSizeHash, 
-	int blockSize, int itemsPerSlot, boolean doCompress, char *fileName);
+	int blockSize, int itemsPerSlot, boolean doCompress, boolean keepAllChromosomes,
+        boolean fixedSummaries, char *fileName);
 /* Create a bigWig file out of a sorted sectionList.  A lower level routine
  * than the one above. */
 
 #endif /* BIGWIGFILE_H */