e947f44bed3e61a500f59423d3c560eff9bcf270
galt
  Fri Dec 13 15:03:41 2013 -0800
Merging in bigWigCat shared branch with --squash. This is Daniel Zerbino's work.
diff --git src/utils/wigToBigWig/test.sh src/utils/wigToBigWig/test.sh
deleted file mode 100755
index a99824c..0000000
--- src/utils/wigToBigWig/test.sh
+++ /dev/null
@@ -1,50 +0,0 @@
-#!/bin/tcsh -ef
-# Relatively quick test script for bigWig system
-# Output should be:
-#      Only in expected: CVS
-# And nothing more
-
-# make temporary directories
-mkdir -p testOut
-mkdir -p testTmp
-
-# generate big wigs
-wigToBigWig testFixed.wig test.sizes testTmp/testFixed.bigWig
-wigToBigWig testVar.wig test.sizes testTmp/testVar.bigWig
-wigToBigWig testBedGraph.wig test.sizes testTmp/testBedGraph.bigWig
-
-# get unscaled data back out
-bigWigToBedGraph testTmp/testFixed.bigWig testOut/testFixed.bedGraph
-bigWigToBedGraph testTmp/testVar.bigWig testOut/testVar.bedGraph
-bigWigToBedGraph testTmp/testBedGraph.bigWig testOut/testBedGraph.bedGraph
-
-# generate summaries on testFixed at lots of resolutions
-bigWigSummary testTmp/testFixed.bigWig chr7 115597761 115598761 1 > testOut/tf1.sum
-bigWigSummary testTmp/testFixed.bigWig chr7 115597761 115598761 3 > testOut/tf3.sum
-bigWigSummary testTmp/testFixed.bigWig chr7 115597761 115598761 10 > testOut/tf10.sum
-bigWigSummary testTmp/testFixed.bigWig chr7 115597761 115598761 30 > testOut/tf30.sum
-bigWigSummary testTmp/testFixed.bigWig chr7 115597761 115598761 100 > testOut/tf100.sum
-bigWigSummary testTmp/testFixed.bigWig chr7 115597761 115598761 300 > testOut/tf300.sum
-bigWigSummary testTmp/testFixed.bigWig chr7 115597761 115598761 1000 > testOut/tf1000.sum
-bigWigSummary testTmp/testFixed.bigWig chr7 115597761 115598761 3000 > testOut/tf3000.sum
-bigWigSummary testTmp/testFixed.bigWig chr7 115597761 115598761 10000 > testOut/tf10000.sum
-
-# generate summaries on testVar at 5 resolutions
-bigWigSummary testTmp/testVar.bigWig chrY 81000 91000 1 > testOut/tv1.sum
-bigWigSummary testTmp/testVar.bigWig chrY 81000 91000 10 > testOut/tv10.sum
-bigWigSummary testTmp/testVar.bigWig chrY 81000 91000 100 > testOut/tv100.sum
-bigWigSummary testTmp/testVar.bigWig chrY 81000 91000 1000 > testOut/tv1000.sum
-bigWigSummary testTmp/testVar.bigWig chrY 81000 91000 10000 > testOut/tv10000.sum
-
-# generate summaries on testBedGraph at 5 resolutions
-bigWigSummary testTmp/testBedGraph.bigWig chr5 131308806 132230652 1 > tbg1.sum
-bigWigSummary testTmp/testBedGraph.bigWig chr5 131308806 132230652 10 > tbg10.sum
-bigWigSummary testTmp/testBedGraph.bigWig chr5 131308806 132230652 100 > tbg100.sum
-bigWigSummary testTmp/testBedGraph.bigWig chr5 131308806 132230652 1000 > tbg1000.sum
-bigWigSummary testTmp/testBedGraph.bigWig chr5 131308806 132230652 10000 > tbg10000.sum
-
-# Do the diff - only output of script should be about the expected/CVS dir
-diff testOut expected
-
-# clean up temporary directories (not executed since fails on diff because of CVS)
-rm -r testOut testTmp