Commits for mspeir

v294_preview to v294_preview2 (2013-12-16 to 2014-01-06) v294

• more fixes related to code review feedback, refs #12302
  • src/hg/makeDb/trackDb/marmoset/calJac1/multiz9way.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac3/cons13way.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/c_briggsae_pwMaf.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce6/multiz6way.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainCaeJap1.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainCaePb1.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainCaePb2.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainCaeRem2.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainCaeRem3.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainCb3.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainCe4.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainCe6.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainPriPac1.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainSelf.html - lines changed 4, context: html, text, full: html, text
• Fixing links on zebrafish (danRer4) track description pages
  • src/hg/makeDb/trackDb/contrastGene.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/bacEndPairs.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/bacEndSingles.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/ctgPos2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/gold.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/multiz7way.html - lines changed 66, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/rhMap.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/vegaGeneZfish.html - lines changed 8, context: html, text, full: html, text
• Fixing links on rat (rn3) track description pages
  • src/hg/makeDb/trackDb/bacEndPairs.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/genomicSuperDups.html - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gnfAtlas2.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/miRNA.html - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/gnfAtlas2.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/recombRateRat.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/ecoresFr1.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/ecoresTetraodon.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/knownGene.html - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/sgpGene.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/stsMapRat.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rgdQtl.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sgpGene.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/trackDb/snpMap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tigrGeneIndex.html - lines changed 4, context: html, text, full: html, text
• Fixing links on yeast (sacCer1) track description pages
  • src/hg/makeDb/trackDb/esRegGeneToMotif.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/oreganno.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/mrna.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/multizYeast.html - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer1/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/transRegCode.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/transRegCodeProbe.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/uwFootprints.html - lines changed 10, context: html, text, full: html, text
• Fixing links on dp2 track description pages
  • src/hg/makeDb/trackDb/chainDm1.html - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/chainDm1.html - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/est.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/intronEst.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/mrna.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/xenoRefGene.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/netDm1.html - lines changed 15, context: html, text, full: html, text
• Fixing links on chimp (panTro4) track description pages
  • src/hg/makeDb/trackDb/chimp/panTro4/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro4/gap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro4/gold.html - lines changed 1, context: html, text, full: html, text
• Track description page changes related to Code Review, refs #12353
  • src/hg/makeDb/trackDb/blatFr1.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/chainDm2.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeRem3/gold.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/cb1/blastzCe1.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/cb1/blastzCe2.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce10/cons7way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce10/cons9way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/axtNetCb1.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/c_briggsae_pwMaf.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce4/multiz5way.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce6/multiz6way.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/mgcFullMrna.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/mgcGenes.html - lines changed 4, context: html, text, full: html, text
• Adding PMID/PMCID for track reference, refs #12288
  • src/hg/makeDb/trackDb/ensGene.html - lines changed 2, context: html, text, full: html, text
• Addind PMID/PMCID for track reference, refs #12288
  • src/hg/makeDb/trackDb/fugu/ensGene.html - lines changed 3, context: html, text, full: html, text
• Adding dasNov3 and oviAri3 to ensGeneDb list and removing them from notEnsemblTranscriptId list, refs #12288
  • src/hg/makeDb/schema/all.joiner - lines changed 2, context: html, text, full: html, text
• Editing links on rat (rn5) track description pages
  • src/hg/makeDb/trackDb/chainNet.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/est.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/est.new.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mrna.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn5/description.html - lines changed 2, context: html, text, full: html, text
• Changing links on xenTro3 track description pages
  • src/hg/makeDb/trackDb/xenTro/intronEst.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/mgcFullMrna.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro3/cons9way.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro3/description.html - lines changed 3, context: html, text, full: html, text
• Changing links on horse (equCab2) track description pages
  • src/hg/makeDb/trackDb/horse/equCab2/ctgPos2.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab2/nscanGene.html - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/intronEst.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenoMrna.html - lines changed 10, context: html, text, full: html, text
• Changing links on drosphila (droMoj1, droMoj2, droAna2) track description pages
  • src/hg/makeDb/trackDb/chainDm2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chainDm3.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droMoj1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droMoj2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/mrna.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/xenoRefGene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/netDm2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/netDm3.html - lines changed 2, context: html, text, full: html, text
• Changing links on tetraodon (tetNig1, tetNig2) track description pages
  • src/hg/makeDb/trackDb/nscanGene.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/chainSelf.html - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/ecoresHg17.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/gaze.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/mrna.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/netSelf.html - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig1/cytokines.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig1/description.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig1/gold.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig1/hoxGenes.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig2/description.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig2/gold.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/xenoMrna.html - lines changed 14, context: html, text, full: html, text
• Changing links on tree shrew (tupBel1) track description pages
  • src/hg/makeDb/trackDb/treeShrew/tupBel1/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/treeShrew/tupBel1/gap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/treeShrew/tupBel1/gold.html - lines changed 1, context: html, text, full: html, text
• Changing links on wallaby and manatee track description pages
  • src/hg/makeDb/trackDb/manatee/triMan1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/manatee/triMan1/gap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/manatee/triMan1/gold.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wallaby/macEug2/description.html - lines changed 1, context: html, text, full: html, text