File Changes for angie

v295_preview2 to v295_base (2014-01-27 to 2014-02-03) v295

• src/hg/makeDb/doc/galGal4.txt
  • lines changed 54, context: html, text, full: html, text
    Re-ran galGal4 snp138 pipeline with the addition of some custom-generated contig mappings. Way back at the beginning of galGal4,
    Hiram found that some contig names were >31 chars and shortened
    them, so they weren't automatically picked up by doDbSnp.pl's
    mapping of RefSeq contigs -> GenBank contigs -> chrom.sizes.
    Expanding them back allows us to get the GB contig ID, then map
    to RS contig ID. refs #12490
    
• src/hg/utils/automation/doDbSnp.pl
  • lines changed 2, context: html, text, full: html, text
    Re-ran galGal4 snp138 pipeline with the addition of some custom-generated contig mappings. Way back at the beginning of galGal4,
    Hiram found that some contig names were >31 chars and shortened
    them, so they weren't automatically picked up by doDbSnp.pl's
    mapping of RefSeq contigs -> GenBank contigs -> chrom.sizes.
    Expanding them back allows us to get the GB contig ID, then map
    to RS contig ID. refs #12490