File Changes for braney

v295_preview2 to v295_base (2014-01-27 to 2014-02-03) v295

• src/hg/pslToBed/tests/expected/doTest1.bed
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    make pslToBed tests less bloated
• src/hg/pslToBed/tests/expected/doTest1.bed.gz
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    make pslToBed tests less bloated
• src/hg/pslToBed/tests/expected/doTest2.bed
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    make pslToBed tests less bloated
• src/hg/pslToBed/tests/expected/doTest2.bed.gz
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    make pslToBed tests less bloated
• src/hg/pslToBed/tests/input/test1.psl
  • lines changed 285, context: html, text, full: html, text
    make pslToBed tests less bloated
• src/hg/pslToBed/tests/input/test1.psl.gz
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    make pslToBed tests less bloated
• src/hg/pslToBed/tests/input/test2.cds
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    make pslToBed tests less bloated
• src/hg/pslToBed/tests/input/test2.cds.gz
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    make pslToBed tests less bloated
• src/hg/pslToBed/tests/input/test2.psl
  • lines changed 55307, context: html, text, full: html, text
    make pslToBed tests less bloated
• src/hg/pslToBed/tests/input/test2.psl.gz
  • lines changed 0, context: html, text, full: html, text
    make pslToBed tests less bloated
• src/hg/pslToBed/tests/makefile
  • lines changed 5, context: html, text, full: html, text
    make pslToBed tests less bloated
• src/hg/utils/automation/synBlastp.csh
  • lines changed 1, context: html, text, full: html, text
    add "-clientLoad" to call to hgLoadPsl in synBlastp.csh
• src/hg/utils/gff3ToPsl/makefile
  • lines changed 1, context: html, text, full: html, text
    fix up tests for gff3ToPsl in response to a code review.
• src/hg/utils/gff3ToPsl/tests/expected/patch1test.psl
  • lines changed 266, context: html, text, full: html, text
    fix up tests for gff3ToPsl in response to a code review.
• src/hg/utils/gff3ToPsl/tests/expected/patch1test.psl.gz
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    fix up tests for gff3ToPsl in response to a code review.
• src/hg/utils/gff3ToPsl/tests/input/chrom.sizes.gz
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    fix up tests for gff3ToPsl in response to a code review.
• src/hg/utils/gff3ToPsl/tests/input/haploMaps.gff
  • lines changed 269, context: html, text, full: html, text
    fix up tests for gff3ToPsl in response to a code review.
• src/hg/utils/gff3ToPsl/tests/input/haploMaps.gff.gz
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    fix up tests for gff3ToPsl in response to a code review.
• src/hg/utils/gff3ToPsl/tests/makefile
  • lines changed 2, context: html, text, full: html, text
    fix up tests for gff3ToPsl in response to a code review.
• src/lib/bbiRead.c
  • lines changed 1, context: html, text, full: html, text
    fix a problem with disappearing narrow peaks in bigWig display. See #12558
  • lines changed 1, context: html, text, full: html, text
    backing out a change I made the other day to bigWig summary levelparsing
    
• src/utils/bigWigCat/bigWigCat.c
  • lines changed 16, context: html, text, full: html, text
    some changes from danile to make it a bit more obvious what overlappingmeans wrt bigWigCat.