File Changes for braney

v294_base to v295_preview (2014-01-13 to 2014-01-20) v295

• src/hg/hgTracks/snakeTrack.c
  • lines changed 4, context: html, text, full: html, text
    draw the pale yellow for N's in snakes
  • lines changed 3, context: html, text, full: html, text
    color mismatches with N's a pale yellow if the N is in the query, or notat all if there is an N in the reference
    
• src/hg/lib/trackHub.c
  • lines changed 3, context: html, text, full: html, text
    fill in a db description for assembly hubs even if it's not set in thegenomes.txt file
    
• src/hg/utils/gff3ToPsl/gff3ToPsl.c
  • lines changed 9, context: html, text, full: html, text
    fix up gff3ToPsl to grok NCBI's mappings from the haplotypes to thereference chroms
    
  • lines changed 1, context: html, text, full: html, text
    make gff3ToPsl pass its tests.
• src/hg/utils/gff3ToPsl/tests/expected/patch1test.psl
  • lines changed 1, context: html, text, full: html, text
    make gff3ToPsl pass its tests.
• src/hg/utils/gff3ToPsl/tests/input/chrom.sizes
  • lines changed 26, context: html, text, full: html, text
    make gff3ToPsl pass its tests.
• src/hg/utils/gff3ToPsl/tests/input/locusNameAndSize.txt
  • lines changed 24, context: html, text, full: html, text
    make gff3ToPsl pass its tests.
• src/hg/utils/gff3ToPsl/tests/input/locusToChrom.sed
  • lines changed 24, context: html, text, full: html, text
    make gff3ToPsl pass its tests.
• src/hg/utils/gff3ToPsl/tests/makefile
  • lines changed 2, context: html, text, full: html, text
    make gff3ToPsl pass its tests.
• src/inc/common.h
  • lines changed 1, context: html, text, full: html, text
    changed BIGNUM to be even bigger because it was casuing a bug inbrowsers with chroms bigger than 0x3ffffff
    
  • lines changed 1, context: html, text, full: html, text
    BIGNUM back to 0x3fffffff per Jim
• src/lib/psl.c
  • lines changed 11, context: html, text, full: html, text
    fix up gff3ToPsl to grok NCBI's mappings from the haplotypes to thereference chroms