d07b35a4251fd13b1857b2cc513fd42446bf30cc
max
  Thu Jan 16 04:09:56 2014 -0800
fixed some more typos in pubs as/sql files
diff --git src/hg/lib/pubsBlat.as src/hg/lib/pubsBlat.as
index 1cedd64..6c04162 100644
--- src/hg/lib/pubsBlat.as
+++ src/hg/lib/pubsBlat.as
@@ -1,19 +1,30 @@
 table pubsBlat
 "publications blat feature table, in bed12+ format, additional field seqIds and seqRanges"
     (
     string chrom;         "chromosome"
     int chromStart;       "start position on chromosome"
     int chromEnd;         "end position on chromosome"
     string name;          "internal articleId, article that matches here"
     int score;            "score of feature"
     char[1] strand;       "strand of feature"
     int thickStart;       "start of exons"
     int thickEnd;         "end of exons"
     int reserved;         "no clue"
     int blockCount;       "number of blocks"
     lstring blockSizes;   "size of blocks"
     lstring chromStarts;  "A comma-separated list of block starts"
-    string tSeqTypes;     "comma-separated list of matching sequence db (g=genome, p=protein, c=cDNA)"
+    string tSeqTypes;     "comma-seq list of matching sequence db (g=genome, p=protein, c=cDNA)"
     lstring seqIds;       "comma-separated list of matching seqIds"
     lstring seqRanges;    "ranges start-end on sequence that matched, one for each seqId"
+    string publisher;     "publisher of article, for hgTracks feature filter"
+    string pmid;          "PMID of article, for annoGrator output, avoids table join"
+    string doi;           "doi of article, for annoGrator output, avoids table join"
+    string issn;          "issn of journal"
+    string journal;       "name of journal"
+    string title;         "title of article, for genome browser mouseover"
+    string firstAuthor;   "first author family name of article, for genome browser"
+    string year;          "year of article, for genome browser"
+    string impact;        "impact factor of journal, for genome browser coloring, derived from official impact factors: max impact is 25, value is scaled to 0-255"
+    string classes;       "classes assigned to journal article, for genome browser coloring"
+    string locus;         "closest gene symbols, one or two, comma-separated"
     )