d07b35a4251fd13b1857b2cc513fd42446bf30cc max Thu Jan 16 04:09:56 2014 -0800 fixed some more typos in pubs as/sql files diff --git src/hg/lib/pubsBingBlat.sql src/hg/lib/pubsBingBlat.sql index e6f3675..aad7a33 100644 --- src/hg/lib/pubsBingBlat.sql +++ src/hg/lib/pubsBingBlat.sql @@ -1,34 +1,34 @@ #publications blat feature table, in bed12+ format, additional field seqIds and seqRanges -CREATE TABLE `pubsBlat` ( +CREATE TABLE `pubsBingBlat` ( `chrom` varchar(255) NOT NULL, # chromosome `chromStart` int(10) unsigned NOT NULL, # start position on chromosome `chromEnd` int(10) unsigned NOT NULL, # end position on chromosome `name` varchar(255) NOT NULL, # internal articleId, article that matches here `score` int(10) unsigned NOT NULL, # score of feature `strand` char(1) NOT NULL, # strand of feature `thickStart` int(10) unsigned NOT NULL, # start of exons `thickEnd` int(10) unsigned NOT NULL, #end of exons `reserved` int(10) unsigned NOT NULL, # no clue `blockCount` int(10) unsigned NOT NULL, # number of blocks `blockSizes` longblob NOT NULL, # size of blocks `chromStarts` longblob NOT NULL, # A comma-separated list of block starts `tSeqTypes` varchar(255) NOT NULL, # comma-seq list of matching sequence db (g=genome, p=protein, c=cDNA) `seqIds` blob NOT NULL, # comma-separated list of matching seqIds `seqRanges` blob NOT NULL, # ranges start-end on sequence that matched, one for each seqId `publisher` varchar(255) NOT NULL, # publisher of article, for hgTracks feature filter `pmid` varchar(255) NOT NULL, # PMID of article, for annoGrator output, avoids table join `doi` varchar(255) NOT NULL, # doi of article, for annoGrator output, avoids table join `issn` varchar(255) NOT NULL, # issn of journal `journal` varchar(255) NOT NULL, # name of journal `title` varchar(255) NOT NULL, # title of article, for genome browser mouseover `firstAuthor` varchar(255) NOT NULL, # first author family name of article, for genome browser - `year` varchar(255) NOT NULL, # issn of journal for article, for genome browser + `year` varchar(255) NOT NULL, # year of article, for genome browser `impact` varchar(255) NOT NULL, # impact factor of journal, for genome browser coloring, derived from official impact factors: max impact is 25, value is scaled to 0-255 `classes` varchar(255) NOT NULL, # classes assigned to journal article, for genome browser coloring `locus` varchar(255) NOT NULL, # closest gene symbols, one or two, comma-separated KEY `name` (`name`(16)), KEY `pmid` (`pmid`(16)), KEY `doi` (`doi`(16)), KEY `chrom` (`chrom`(6)), KEY `chromStartAndName` (`chrom`(6), chromStart, name) );